Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206...    29   3.6  
At1g71040.1 68414.m08199 multi-copper oxidase type I family prot...    28   6.3  

>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
           Protein of unknown function (DUF715)
          Length = 453

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 115 MDDPFVSCPYNPIHRVPRSRLQRHIVKCEWINPTM 219
           ++  ++ CP +P H V +  L+ H+ +C  +  T+
Sbjct: 38  LEGQWIPCPIDPSHSVLQENLEWHVKRCPLLKQTV 72


>At1g71040.1 68414.m08199 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
 Frame = +3

Query: 213 NNDCVPLQRNTQVYQED---MKFHVLNCPSK--TSIFP---IEKPPKTVASITTPKIILQ 368
           NN   P      V +E+   MKF ++N  S+  TSI P   IE PP  V++ T  + I  
Sbjct: 362 NNAPYPYPSGDPVTEENSKVMKF-IINYKSEVDTSIIPKKLIEYPPAHVSTSTRTRYIAM 420

Query: 369 KEYLPETD-PNH 401
            EY+   D P H
Sbjct: 421 FEYVSSIDEPTH 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,110
Number of Sequences: 28952
Number of extensions: 338516
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)