Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20418
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.8
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 3.8
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 5.0
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.0
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.6
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.6
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 6.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.8
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.8
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 8.8
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 25 8.8
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +3
Query: 282 VSSPESNI-----IFNCVANIAKLYVYFPSDTNNL 371
+SSP S++ F V NI+KLYVY TN+L
Sbjct: 913 LSSPSSDLEVKQQAFTYVCNISKLYVYKSDATNSL 947
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 322 LTLQNYMYIFHLIPIICIYPQHHSLESSLYPAFVLLVHHNYHPS 453
L +N +Y HL+ I+ + P S +S+ V L HN +PS
Sbjct: 1393 LLQENRVYAAHLVYILSLSPDVCSNKSNSLFELVGLSKHNLYPS 1436
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 300 NIIFNCVANIAKLYVYFPSDTNNLY--LSPASFP*IFFVP 413
N++ CV +Y+ PSD Y SP P +F VP
Sbjct: 155 NLLETCVRTSRPVYLAVPSDAGYFYTDASPLKTPLVFPVP 194
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 346 IFHLIPIICIYPQHHSLESSLYPAFVLLVHHNYHPSLWSLRHP 474
IF+++ IC + L + A+V + HN H + +++HP
Sbjct: 33 IFYIL-YICFGTTSYILSGIILGAYVNSLFHNNHSVILNIKHP 74
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 5.0
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Frame = +1
Query: 181 IMVKARMIITRFSPFPTFFSNVV----TNDQLVSQ-------SNL*VLQRAT*YSTVWLT 327
I KA + +F+ +F S+V+ N LV Q SNL T Y+TVWL
Sbjct: 234 ISSKAHKALVQFNGLTSFHSDVIISVFVNKGLVDQAAAYLKNSNLNERNLPTIYTTVWL- 292
Query: 328 LQNYMYIFH-LIPIICIYPQHHSL 396
LQ H L P++ I+ + S+
Sbjct: 293 LQRLFEAHHSLDPLLTIFDYYLSV 316
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 170 RDVRHKIGNPQPWSEEATSAQRPEPKPAPVTPKFTAKVEP 51
+ + H + NP+ + P +PA VTPK V P
Sbjct: 257 KKIVHVVHNPRLHQNKVLRVSIPGSQPALVTPKHKMNVPP 296
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 377 IPSIIPLNLLCTQHLYYWCIIITTLH 454
IP NL+ T +YY C+I+ H
Sbjct: 450 IPKFCSSNLILTSAIYYSCLILIHRH 475
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +3
Query: 201 DNNTLFTFPNILQQCRN--K*STCITE*SVSSPESNIIFN-CVANIAKLYVYFPSDTNNL 371
D++T F F N+L+ C N K ++ +T S + CV + Y P+D
Sbjct: 340 DSSTAFEFVNVLRTCANELKMTSFVTAYQASEKIYKLFDRICVLYAGRQIYYGPADKAKQ 399
Query: 372 YLSPASF 392
Y F
Sbjct: 400 YFLDMGF 406
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 149 GNPQPWSEEATSAQRPEPKPAP 84
G+P PW+ +TS PAP
Sbjct: 404 GHPPPWAAASTSVSSSTSSPAP 425
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 110 QRPEPKPAPVTPKFTA-KVEPK-AANLDSSMLSV 15
Q P+P P+P TP A ++ P AA+ D M+S+
Sbjct: 165 QTPQPAPSPNTPSGNANQLTPAYAASFDKFMVSL 198
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 146 NPQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAAN 39
N P S +S +RP KP P ++PK N
Sbjct: 271 NLSPLSLNTSSFRRPITKPTPFNSDSNISIDPKDNN 306
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 367 ICIYPQHHSLESSLYPAFVLLVHHNYHPSLWSL 465
I ++ QH SL+S L F LL H++ S+
Sbjct: 116 IRLFKQHQSLDSFLLSLFDLLCSHHFSVEFTSI 148
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 12 FNREHT---GIEISSFWFYFSRKLWSYWC 89
FN + T G+E + +F + RK +YWC
Sbjct: 187 FNEQLTTKYGLEFRTIFFSYIRKYDAYWC 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,696
Number of Sequences: 5004
Number of extensions: 62436
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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