Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20418
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0934 - 32851709-32853398,32854458-32854738 36 0.035
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 1.3
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 30 2.3
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 29 3.0
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 29 3.0
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 5.2
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 28 6.9
01_07_0343 - 42866940-42867656 28 6.9
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 28 9.2
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 9.2
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 28 9.2
01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697 28 9.2
>02_05_0934 - 32851709-32853398,32854458-32854738
Length = 656
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = -2
Query: 481 LSEGALETIMKGGNYDAPIIQMLGTKKIQGNDAG----DRYRLLVSDGKYTYSFAMLATQ 314
L+ + + G P++Q++ + +Q N AG +R+R +VSDG S A+ A Q
Sbjct: 6 LTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGT-AASSALFAAQ 64
Query: 313 LNIMLLSGELTDYSVIQV 260
L+ SG L S++Q+
Sbjct: 65 LSDHARSGALRRGSIVQL 82
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 137 PWSEEATSAQRPEPKPAPVTPKFTAKVEPKAANL 36
P +EEA + P P P P P + V+P AA+L
Sbjct: 193 PGTEEAGPSTLPPPPPPPPLPASSEPVDPSAASL 226
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 568 RQQKQNCQTCDFKLKSKYNNTSKSKMSYNLSEGALETIMKGGNYDAP 428
R+ K NC C F + KY + + + L E + + K N D P
Sbjct: 619 RKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKDANMDDP 665
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 39 ISSF-WFYFSRKLWSYWCRL 95
IS F WFYF KL SY CR+
Sbjct: 174 ISMFLWFYFGNKLESYLCRI 193
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 173 GRDVRHKIGNPQPWSEEATSAQRPEPKPAPVTPKFTAKV 57
G + R + NP P + Q+ +P+PAP P+F +V
Sbjct: 543 GANQRVRYTNPYPGGSSSQQQQQQQPRPAP-RPQFVVRV 580
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 143 PQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAAN 39
P P +E+T P P PAPV +A P A+
Sbjct: 149 PPPPPQESTPPPPPPPPPAPVAAAVSAPAPPSPAS 183
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 405 RRFKGMMLGIDTDYWYQMENIHIVLQ 328
R+F G++ GIDTD W + H+ +Q
Sbjct: 665 RKFVGILNGIDTDTWNPSTDRHLKVQ 690
>01_07_0343 - 42866940-42867656
Length = 238
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 376 YPQHHSLESSLYPAFVLLVHHNYH 447
+P HHS ++ Y A V HH +H
Sbjct: 212 HPHHHSYNNAAYAATVSSYHHYHH 235
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = -1
Query: 353 WKIYI*FCNVSHTVEYYVALWRTYRLLCDTS*SFVTTL-LKNVGKGEKRVIIILALTIIA 177
+ IY+ + ++ + ++ + + L D S SF L K G+G ++ I+ T
Sbjct: 472 YTIYLTMSGWAFSISFVISFFPSIALEADGSCSFGYFLEAKMWGEGAEQGGILQTSTAKL 531
Query: 176 NGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVTP 75
++ +++ PQP+ + Q+ P P +P
Sbjct: 532 ELKEPYYRLSQPQPYVMQQDQQQQQLPSLQPQSP 565
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 170 RDVRHKIGNPQPWSEEATSAQRPEPKPAP 84
R + GNP E+ S Q P PKPAP
Sbjct: 218 RPTKSYTGNPPQPLEKDASPQPPPPKPAP 246
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 125 EATSAQRPEPKPAPVTPKFTAKVEPKAANLDSSMLSV 15
+A A+ P P P P FT + PK+A M +V
Sbjct: 237 KAPGAKAPPPPALPSAPLFTTEKSPKSAQPKEGMSAV 273
>01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697
Length = 204
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 161 RHKIGNPQPWSEEATS-AQRPEPKPAPVTPKFT 66
RH+ GN SE++ + A P P PAP P T
Sbjct: 9 RHRAGNSSSPSEDSPAPAPAPAPAPAPPQPSRT 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,492,842
Number of Sequences: 37544
Number of extensions: 383139
Number of successful extensions: 1347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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