Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20418
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 33 0.25
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 32 0.57
SB_28102| Best HMM Match : YTH (HMM E-Value=0) 31 0.76
SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049) 31 1.3
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 31 1.3
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_41274| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11561| Best HMM Match : HAT (HMM E-Value=1.1) 30 2.3
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035) 29 4.1
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84) 28 7.1
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 355 LIPIICIYPQHHSLESSLYPAFVLLVHHNYHPSLWS--LRHPPTN 483
+I II I+ HH SS + ++++HH++HPS S + H P++
Sbjct: 306 IIIIIIIHHHHHPSSSS---SIIIIIHHHHHPSSSSSIIHHHPSS 347
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 355 LIPIICIYPQHHSLESSLYPAFVLLVHHNYHPS 453
+I II I+ HH SS+ ++++HH++HPS
Sbjct: 242 IIIIIIIHHHHHPSSSSI----IIIIHHHHHPS 270
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 364 IICIYPQHHSLESSLYPAFVLLVHHNYHPS 453
II I+ HH SS + ++++HH++HPS
Sbjct: 260 IIIIHHHHHPSSSS---SIIIIIHHHHHPS 286
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 364 IICIYPQHHSLESSLYPAFVLLVHHNYHPS 453
II I+ HH SS ++++HH++HPS
Sbjct: 291 IIIIHHHHHPSSSSSI-IIIIIIHHHHHPS 319
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 346 IFHLIPIICIYPQHHSLESSLYPAFVLLVHHNYHPS 453
I H II I HH SS+ ++++HH++HPS
Sbjct: 44 IHHPSSIIIIIHHHHPSSSSI---IIIIIHHHHHPS 76
>SB_28102| Best HMM Match : YTH (HMM E-Value=0)
Length = 325
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 143 PQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAA-NLDSS 27
P+ W+ A+ +P+PKP P PK +V N DS+
Sbjct: 53 PKSWAAIASQPAKPKPKPPPQKPKLPGQVPTNGGPNKDST 92
>SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)
Length = 812
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 215 KRVIIILALTIIANGRDVRHKIGNPQPWSE-EATSAQRPEPKPAP 84
++V+I+L LT + +V KIGNP+ ++ A Q PAP
Sbjct: 50 RKVLILLELTTVKRASEVPGKIGNPRNAADNNAGGQQNGNAAPAP 94
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 116 SAQRPEPKPAPVTPKFTAKVEPKAANLDS 30
SA+ EP P P P FT +P LDS
Sbjct: 655 SAKPVEPSPVPAKPSFTRSTKPVTLKLDS 683
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 206 IIILALTIIANGR-DVRHKIGNPQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAA 42
+I++ +G+ DV + +P S TS Q+ KP P T K ++ PK A
Sbjct: 317 VIVVQPNYSGSGKFDVHKQSDRQRPKSAMETSCQKENNKPRPQTAKGKSQTRPKTA 372
>SB_41274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 361 VSDGKYTYSFAMLATQLNIMLLSGELTDYSVIQVDHLLRHC 239
VSDG+Y YS +T L + +LS + + YS D ++ C
Sbjct: 9 VSDGQYQYSIVTDSTTLQLFILSRDPSTYSKYN-DEVMAFC 48
>SB_11561| Best HMM Match : HAT (HMM E-Value=1.1)
Length = 409
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 176 NGRDVRHKIGNPQPWSEEATSAQRPEPKPAP-VTPKFTAKVEPKAANLDSSMLSVKMT 6
N + R + P+P + PK P VTPK T KV PK + ++ K+T
Sbjct: 30 NSSETRDQSVGPEPSKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVT 87
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +1
Query: 355 LIPIICIYPQHH---SLESSLYPAFVLLVHHNY--HPSLWSL 465
+I II I+ Q+H S SSL ++++HH Y HPS+ SL
Sbjct: 463 IINIIIIHHQYHHYPSSISSLSIINIIIIHHQYHHHPSISSL 504
>SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = -1
Query: 284 YRLLCDTS*SFVTTLLKNVGKGEKRVIIILALTIIANGRDVRHKIGNPQPW----SEEAT 117
YR LC+ + GE + L +AN + ++GN +P ++++
Sbjct: 98 YRKLCEFLTESAVVKCASTLNGEYNTTLALLHEALANPVSIEERVGNQRPQVKRILDQSS 157
Query: 116 SAQRP---EPKPAPVTPKFTAKVEPKAANL 36
SA+ P + K AP + AK+ + A +
Sbjct: 158 SAETPGQTDKKMAPASRDLQAKLPAEVAQI 187
>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
Length = 351
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = -1
Query: 284 YRLLCDTS*SFVTTLLKNVGKGEKRVIIILALTIIANGRDVRHKIGNPQPW----SEEAT 117
YR LC+ + GE + L +AN + ++GN +P ++++
Sbjct: 98 YRKLCEFLTESAVVKCASTLNGEYNTTLALLHEALANPVSIEERVGNQRPQVKRILDQSS 157
Query: 116 SAQRP---EPKPAPVTPKFTAKVEPKAANL 36
SA+ P + K AP + AK+ + A +
Sbjct: 158 SAETPGQTDKKMAPASRDLQAKLPAEVAQI 187
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/94 (27%), Positives = 37/94 (39%)
Frame = -2
Query: 616 IVTLFNLQFKTQGSETRQQKQNCQTCDFKLKSKYNNTSKSKMSYNLSEGALETIMKGGNY 437
I TLF L FK T +KQN + + K + N K E + K N
Sbjct: 492 IQTLFRLNFKMADETTTGEKQNDSSQELTAKQRRNKKKKEAAKRKKQEQRQDD-TKPENT 550
Query: 436 DAPIIQMLGTKKIQGNDAGDRYRLLVSDGKYTYS 335
+ ++I + GD YR ++D TYS
Sbjct: 551 VQEEVNKPKKRQIMFSVFGD-YRKKMADDLKTYS 583
>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
Length = 649
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 146 NPQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAANLDS 30
+P P+ ++ + QRP P P + K KV+ ++ DS
Sbjct: 519 SPAPYKQQESKPQRPSPSPTSIDAK--TKVKTSSSGEDS 555
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 379 PQHHSLESSLYPAFV-LLVHHNYHPSLWSLRHPP 477
P H L SS L + HNYHP++ L PP
Sbjct: 333 PSSHLLPSSTITTQPSLTIVHNYHPAISYLHRPP 366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,995,775
Number of Sequences: 59808
Number of extensions: 443749
Number of successful extensions: 1314
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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