Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20418
         (752 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70277-1|CAA94241.1|  603|Drosophila melanogaster replication pr...    83   4e-16
AY069331-1|AAL39476.1|  603|Drosophila melanogaster LD04815p pro...    83   4e-16
AE014297-719|AAF54206.1|  603|Drosophila melanogaster CG9633-PA ...    83   4e-16
AE014297-1754|AAF54984.1| 1481|Drosophila melanogaster CG14365-P...    31   2.2  
BT012668-1|AAT08474.1|  119|Drosophila melanogaster RE50359p pro...    30   2.9  
L14849-1|AAA28748.1|  548|Drosophila melanogaster tyrosine phosp...    29   9.0  
L11253-1|AAA75339.1|  548|Drosophila melanogaster protein ( D.me...    29   9.0  
L11252-1|AAA75338.1|  535|Drosophila melanogaster protein ( D.me...    29   9.0  
L11251-1|AAA75349.1|  535|Drosophila melanogaster protein ( D.me...    29   9.0  
L11250-1|AAA75348.1|  548|Drosophila melanogaster protein ( D.me...    29   9.0  
AE014296-243|AAF47487.1|  548|Drosophila melanogaster CG9181-PA,...    29   9.0  
AE014296-242|AAF47486.1|  535|Drosophila melanogaster CG9181-PB,...    29   9.0  

>Z70277-1|CAA94241.1|  603|Drosophila melanogaster replication
           protein A protein.
          Length = 603

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/94 (43%), Positives = 61/94 (64%)
 Frame = -2

Query: 484 NLSEGALETIMKGGNYDAPIIQMLGTKKIQGNDAGDRYRLLVSDGKYTYSFAMLATQLNI 305
           +LS G +  IM G   DAP++Q+L  KKI      +RYR+L+SDGKY  S+AMLA+QLN+
Sbjct: 5   SLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNV 64

Query: 304 MLLSGELTDYSVIQVDHLLRHC*RMLGKVKSVLL 203
           M  +GEL +++++Q+D  +       G  K VL+
Sbjct: 65  MQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLI 98



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -1

Query: 254 FVTTLLKNVGKGEKRVIIILALTIIANGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVT- 78
           +VT+L+   G G KRV+II  LT++  G +V+ KIG P  +  E  + Q   PKPA  + 
Sbjct: 82  YVTSLVGKDGAG-KRVLIISELTVVNPGAEVKSKIGEPVTY--ENAAKQDLAPKPAVTSN 138

Query: 77  PKFTAKVEPKAANLDSSMLS 18
            K  AK EP   N ++ +++
Sbjct: 139 SKPIAKKEPSHNNNNNIVMN 158


>AY069331-1|AAL39476.1|  603|Drosophila melanogaster LD04815p
           protein.
          Length = 603

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/94 (43%), Positives = 61/94 (64%)
 Frame = -2

Query: 484 NLSEGALETIMKGGNYDAPIIQMLGTKKIQGNDAGDRYRLLVSDGKYTYSFAMLATQLNI 305
           +LS G +  IM G   DAP++Q+L  KKI      +RYR+L+SDGKY  S+AMLA+QLN+
Sbjct: 5   SLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNV 64

Query: 304 MLLSGELTDYSVIQVDHLLRHC*RMLGKVKSVLL 203
           M  +GEL +++++Q+D  +       G  K VL+
Sbjct: 65  MQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLI 98



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -1

Query: 254 FVTTLLKNVGKGEKRVIIILALTIIANGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVT- 78
           +VT+L+   G G KRV+II  LT++  G +V+ KIG P  +  E  + Q   PKPA  + 
Sbjct: 82  YVTSLVGKDGAG-KRVLIISELTVVNPGAEVKSKIGEPVTY--ENAAKQDLAPKPAVTSN 138

Query: 77  PKFTAKVEPKAANLDSSMLS 18
            K  AK EP   N ++ +++
Sbjct: 139 SKPIAKKEPSHNNNNNIVMN 158


>AE014297-719|AAF54206.1|  603|Drosophila melanogaster CG9633-PA
           protein.
          Length = 603

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/94 (43%), Positives = 61/94 (64%)
 Frame = -2

Query: 484 NLSEGALETIMKGGNYDAPIIQMLGTKKIQGNDAGDRYRLLVSDGKYTYSFAMLATQLNI 305
           +LS G +  IM G   DAP++Q+L  KKI      +RYR+L+SDGKY  S+AMLA+QLN+
Sbjct: 5   SLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNV 64

Query: 304 MLLSGELTDYSVIQVDHLLRHC*RMLGKVKSVLL 203
           M  +GEL +++++Q+D  +       G  K VL+
Sbjct: 65  MQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLI 98



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -1

Query: 254 FVTTLLKNVGKGEKRVIIILALTIIANGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVT- 78
           +VT+L+   G G KRV+II  LT++  G +V+ KIG P  +  E  + Q   PKPA  + 
Sbjct: 82  YVTSLVGKDGAG-KRVLIISELTVVNPGAEVKSKIGEPVTY--ENAAKQDLAPKPAVTSN 138

Query: 77  PKFTAKVEPKAANLDSSMLS 18
            K  AK EP   N ++ +++
Sbjct: 139 SKPIAKKEPSHNNNNNIVMN 158


>AE014297-1754|AAF54984.1| 1481|Drosophila melanogaster CG14365-PA
           protein.
          Length = 1481

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 152 IGNPQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAAN 39
           +GN +   +E    +  E +P P+ PK TA   P+ AN
Sbjct: 464 MGNEEEQKQEDEEQENVEAEPVPILPKKTAPKSPQNAN 501


>BT012668-1|AAT08474.1|  119|Drosophila melanogaster RE50359p
           protein.
          Length = 119

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +1

Query: 334 NYMYIFHLIPIICIYP-QHH-SLESSLYPAF 420
           NY++IF ++ I C+Y  +HH SL S+ +P F
Sbjct: 84  NYVFIFFVLMIYCLYNLKHHGSLHSAGHPGF 114


>L14849-1|AAA28748.1|  548|Drosophila melanogaster tyrosine
           phosphatase protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>L11253-1|AAA75339.1|  548|Drosophila melanogaster protein (
           D.melanogaster proteintyrosine phosphatase mRNA,
           complete cds. ).
          Length = 548

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>L11252-1|AAA75338.1|  535|Drosophila melanogaster protein (
           D.melanogaster proteintyrosine phosphatase mRNA,
           complete cds. ).
          Length = 535

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>L11251-1|AAA75349.1|  535|Drosophila melanogaster protein (
           D.melanogaster proteintyrosine phosphatase gene,
           complete cds. ).
          Length = 535

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>L11250-1|AAA75348.1|  548|Drosophila melanogaster protein (
           D.melanogaster proteintyrosine phosphatase gene, exons
           2-6 and complete cds.).
          Length = 548

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>AE014296-243|AAF47487.1|  548|Drosophila melanogaster CG9181-PA,
           isoform A protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


>AE014296-242|AAF47486.1|  535|Drosophila melanogaster CG9181-PB,
           isoform B protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 QFKTQGSET-RQQKQNCQTCDFKLKSKYNNTSKSKMSYN 482
           ++K +G +  R  K+ C+TCD + K K  +TS+S+   N
Sbjct: 22  EYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTN 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,744,866
Number of Sequences: 53049
Number of extensions: 681173
Number of successful extensions: 2358
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2350
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)