Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20418
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06510.1 68415.m00721 replication protein, putative similar t... 42 4e-04
At5g45400.1 68418.m05579 replication protein, putative similar t... 36 0.038
At2g06510.2 68415.m00722 replication protein, putative similar t... 35 0.050
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 30 1.4
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 29 2.5
At2g07880.1 68415.m01007 hypothetical protein 29 2.5
At1g29280.1 68414.m03580 WRKY family transcription factor simila... 29 2.5
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 24 2.8
At1g55960.1 68414.m06418 expressed protein weak similarity to SP... 29 4.4
>At2g06510.1 68415.m00721 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 640
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = -2
Query: 493 MSYNLSEGALETIMKGGNYDAPIIQMLGTKKIQGND--AGDRYRLLVSDGKYTYSFAMLA 320
M +L+ A+ I G P++Q+L K I + + +RYR L+SDG + AM+A
Sbjct: 1 MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDG-VSAQHAMVA 59
Query: 319 TQLNIMLLSGELTDYSVIQ-VDHL 251
QLN + SG+ S++Q +D++
Sbjct: 60 VQLNDRVKSGQFEKGSIVQLIDYI 83
>At5g45400.1 68418.m05579 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain, PF04057:
Replication factor-A protein 1, N-terminal domain
Length = 853
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = -2
Query: 493 MSYNLSEGALETIMKG---GNYDA-PIIQMLGTKKIQGN-----DAGDRYRLLVSDGKYT 341
M+ +L+EG + ++ G D P++Q+ K IQ ++ +RY+ L+SDG
Sbjct: 1 MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGT-D 59
Query: 340 YSFAMLATQLNIMLLSGELTDYSVIQVDHLL 248
+ ML T LN ++ G + SVI++ H +
Sbjct: 60 LAAGMLNTSLNSLVNQGTIQLGSVIRLTHYI 90
>At2g06510.2 68415.m00722 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 617
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -2
Query: 424 IQMLGTKKIQGNDAGDRYRLLVSDGKYTYSFAMLATQLNIMLLSGELTDYSVIQ-VDHL 251
I+M+G + + + RYR L+SDG + AM+A QLN + SG+ S++Q +D++
Sbjct: 6 IKMIGRSQERSQE---RYRFLISDG-VSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYI 60
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 209 VIIILALTIIANGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVTPKFTAKVEP 51
V+I +++TI+++ + P+P A + +P+P PAP PK K P
Sbjct: 11 VLIFISITIVSSAPAPKP----PKPKPAPAPTPPKPKPTPAPTPPKPKPKPAP 59
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 143 PQPWSEEATSAQRPEPKPAPVTPK 72
P+P A + +P+PKPAP PK
Sbjct: 40 PKPKPTPAPTPPKPKPKPAPTPPK 63
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 143 PQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAAN 39
P+P A + +P+P PAP PK K P N
Sbjct: 62 PKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPTPPN 96
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and polyadenylation
specificity factor, 160 kDa subunit (CPSF 160 kDa
subunit) {Mus musculus}; contains Pfam profile PF03178:
CPSF A subunit region
Length = 1442
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = -2
Query: 505 SKSKMSYNLSEGALE----TIMKGGNYDAPIIQMLGTKKIQGNDAGDRYR-LLVSDGKYT 341
+K+K+ SE AL T++ + + +GT +QG D R R LL S GK
Sbjct: 1099 TKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNG 1158
Query: 340 YSFAMLATQLNIMLLSGELTDYSVIQVDHLL 248
+ + T++ L G ++ + IQ HLL
Sbjct: 1159 DNSQNVVTEVYSRELKGAISAVASIQ-GHLL 1188
>At2g07880.1 68415.m01007 hypothetical protein
Length = 173
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 376 YPQHHSLESSLYPAFVLLVHHNYHPSLWSL-RHPPTNY 486
Y HHSL+ SLY HH+ SL+ R PP ++
Sbjct: 49 YHHHHSLDQSLYQQVEYHHHHSLDQSLYQHGRVPPLSF 86
>At1g29280.1 68414.m03580 WRKY family transcription factor similar
to DNA binding protein WRKY3 GB:U56834 GI:1432055 from
[Petroselinum crispum]
Length = 259
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 137 PWSEEATSAQRPEPKPAPVTPKFTAKVEPKAANLDSSML 21
PW +++ P+PKP P P+ +VEP+A D+ +
Sbjct: 132 PWPLTSSTRNGPKPKPEP-KPEPEPEVEPEAEEEDNKFM 169
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 143 PQPWSEEATSAQRPEPKPAP 84
P P + A PEPKPAP
Sbjct: 70 PTPPKPQPKPAPPPEPKPAP 89
Score = 23.4 bits (48), Expect(2) = 2.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 104 PEPKPAPVTPKFTAKVEP 51
P PKPAP PK K P
Sbjct: 129 PSPKPAPSPPKPENKTIP 146
>At1g55960.1 68414.m06418 expressed protein weak similarity to
SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
{Mus musculus}
Length = 403
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 12 FNREHTGIEISSFWFYFSRKLWSYWCRL 95
F++E+ G+ + FS+ +WSY C++
Sbjct: 255 FHQENAGLNVEMAKLAFSKGIWSYVCKM 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,997
Number of Sequences: 28952
Number of extensions: 319311
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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