Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20416
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.18 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    24   6.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   6.9  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   6.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   9.1  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -1

Query: 275 LVQSLFLRRST----IWTIPRRWWRKRCTWGIRCLWVC 174
           L   LFLR ST    +W +PR  W     + +  LW+C
Sbjct: 313 LFARLFLRGSTLVGSVWVLPRSSWVLASFYSLHFLWLC 350


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 212 SATTSGV*SIWCSSSETGFVPSYGHKHYNTTSYNHSRSLPRMSS 343
           ++ TS   S   SSS +  V S      +++S +HS S+P  SS
Sbjct: 112 ASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSS 155


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 PAVFCGSPSRASTAYIPTGI*SPRCTFSATTS 226
           PA   GSP+  +T Y PT I  P   +S + S
Sbjct: 196 PANSRGSPANYNTPYYPTAIPPPIEEYSPSVS 227


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 109 NQL*PSNPRRILRQSLQGFNRI--HTHRHLIPQVHLF 213
           N+L P   +++L+   +    I  H H HLIP ++ F
Sbjct: 122 NKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFF 158


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 96  SLMEKPTVTEQPPPYSAAVPPGLQPHT 176
           S+ ++P V   PPPY     P   P T
Sbjct: 571 SVTQRPAVNVGPPPYVRPSAPSKLPDT 597


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 111  PTVTEQPPPYSAAVPP 158
            P+VT Q PP S+ +PP
Sbjct: 1048 PSVTPQLPPVSSRLPP 1063


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 239 WTIPRRWWRKRCTWGIRCLWVCMRLKPWRDCRRI 138
           + I R  WR +C +  RCL+    +  W     +
Sbjct: 5   YRICRDIWRGKCIYVFRCLYTNHAVVSWNQTNEV 38


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 168 VEALEGLPQNTAGVARSQLVSPLN*IISSQN 76
           +E L+   +NT  + +  L+ PL+ ++ S+N
Sbjct: 711 IETLKRNTENTVAILKCLLIIPLSILLKSKN 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,398
Number of Sequences: 5004
Number of extensions: 31334
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)