Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20416
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0407 - 21040536-21041352,21041452-21042044 29 1.2
08_01_0568 - 5052608-5052937 27 4.9
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 27 4.9
01_06_0182 - 27264990-27265049,27265531-27265648,27265733-272658... 27 4.9
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 27 6.5
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 6.5
03_03_0249 + 15832086-15833261 27 6.5
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 26 8.6
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 26 8.6
01_05_0783 + 25183361-25185628 26 8.6
>05_04_0407 - 21040536-21041352,21041452-21042044
Length = 469
Score = 29.1 bits (62), Expect = 1.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 311 YSWWYYNVCGRSLVQSLFL 255
++WWY+ +CG + V +FL
Sbjct: 96 FNWWYFGMCGGTAVTLVFL 114
>08_01_0568 - 5052608-5052937
Length = 109
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 332 GASSDCDYSWWYYNVCGRSLVQSLFLRRSTIWTIPRRWWR 213
G S D D + G V L LR + + + RRWWR
Sbjct: 17 GGSRDVDEEKIRCHRLGSESVSPLELREAILGDLGRRWWR 56
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +2
Query: 92 IQFNGETNCDRATPAVFCGSPSRASTAYIPTGI*SPRCTFSATTSGV*SIWCSSSETGFV 271
+QF GE + AT G+PS T P G+ + S S+ E+G+
Sbjct: 766 VQFTGEGDFTHATQDQDHGAPSSQRTTIAP-GVRQQQQFSDIQQDSSSSFSASNFESGY- 823
Query: 272 PSYGHKHYNTTSY 310
P+Y + H + Y
Sbjct: 824 PTYVYNHPQASDY 836
>01_06_0182 -
27264990-27265049,27265531-27265648,27265733-27265811,
27266816-27267116
Length = 185
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 126 QPPPYSAAVPPGLQPHTY 179
QPPP S AV P L P TY
Sbjct: 68 QPPPPSYAVYPPLPPQTY 85
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = -1
Query: 227 RRWWRKRCTWGIRCLWVCMRLKPWRDCRRIRRGLLGHSWF 108
R WR G+R LW+C + R+ + WF
Sbjct: 39 REQWRWEAVEGVRGLWLCAAFLSADEQSRLLTAIRREGWF 78
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 281 GHKHYNTTSYNHSRSLPRMSSW 346
GH H N T +HS LP + W
Sbjct: 308 GHHHNNYTGGSHSWELPFLQGW 329
>03_03_0249 + 15832086-15833261
Length = 391
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 242 WCSSSETGFVPSYGHKHY 295
WCSSS VP YG +HY
Sbjct: 147 WCSSSPPPLVPLYG-RHY 163
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 95 QFNGETNCDRATPAVFCGSPSRASTA 172
Q+ + D +TP+V GSP +AST+
Sbjct: 133 QYLSSDSEDTSTPSVLIGSPHKASTS 158
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 272 VQSLFLRRSTIWTIPRRWWR 213
V +F ++ST T PRRWWR
Sbjct: 117 VALMFRKKST--TTPRRWWR 134
>01_05_0783 + 25183361-25185628
Length = 755
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 308 SWWYYNVCGRSLVQSLFLRRSTIWTIPRRWW 216
SWW+Y + S+ SL L + WW
Sbjct: 431 SWWFYAMLALSMAVSLLLCTVLRSAVQLPWW 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,019
Number of Sequences: 37544
Number of extensions: 226676
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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