Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20416
(377 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_18270| Best HMM Match : Carla_C4 (HMM E-Value=3.5) 29 0.95
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 1.3
SB_44845| Best HMM Match : Cornifin (HMM E-Value=0.093) 29 1.3
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 29 1.3
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 2.9
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 27 3.8
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 27 5.1
SB_43933| Best HMM Match : Allexi_40kDa (HMM E-Value=7.1) 27 6.7
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 218 TTSGV*SIWCSSSETGFVPSYGHKHYNTTSYNH 316
TTS V +I C+ S T Y H H+N S+NH
Sbjct: 209 TTSTVITITCNISTTPPQHHYHHHHHNHYSHNH 241
>SB_18270| Best HMM Match : Carla_C4 (HMM E-Value=3.5)
Length = 129
Score = 29.5 bits (63), Expect = 0.95
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 184 RHLIPQVHLFRHHLRGIVHMVLLLRNRLCTKLRPQT 291
RH++P+V FRHH +VLL NR + RP+T
Sbjct: 15 RHVVPRVKKFRHHNL----IVLLSLNRGSIQSRPET 46
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 157 QGFNRIHTHRHLIPQVHLFRHHLRGIVHMVLLLRNRLCTKLRP 285
+ F+R R + H+F + + +V +++NRLC ++RP
Sbjct: 1384 RAFSRAQLRRISTDRRHMFTVGFKALRRLVGVMKNRLCREVRP 1426
>SB_44845| Best HMM Match : Cornifin (HMM E-Value=0.093)
Length = 232
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 212 SATTSGV*SIWCSSSETGFVPSYGHK----HYNTTSYNHSRSLPRMSSWHFRR 358
S +++ SIW SSSET S+ + HY T+ +H R R + H+RR
Sbjct: 58 STSSTNSESIWISSSETQTTISHNRRTTISHYRRTTISHYR---RTTISHYRR 107
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 128 TPAVFCGSPSRASTAYIPTGI*SPRCTFSATTSGV*SIWCSSSETGFVPSYGHKHYNTTS 307
TP+ C + ++T+Y PT +P +++ TTS S + T + P+ + TTS
Sbjct: 101 TPSYTCTTSYTSTTSYTPTTSYTPTTSYTCTTSYT-STTSYTPTTSYTPTTSYT--LTTS 157
Query: 308 YNHSRSLPRMSSW 346
Y + S +S+
Sbjct: 158 YTCTTSYTCTTSY 170
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 103 WRNQL*PSNPRRILRQSLQGFNRIHTHRHLIPQVHLFR 216
WR + P RRI + S Q F+R TH L HLF+
Sbjct: 254 WRRRRQPEQSRRIAKFSRQVFHRT-THWSLKDSTHLFK 290
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.9 bits (59), Expect = 2.9
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +2
Query: 92 IQFNGETNCDRATPAVFCGSPSR--ASTAYIPTGI*SPRCTFSATTSGV*SIWCSSSETG 265
+ N T R TP S + ++T+Y PT +P ++++TTS S +S T
Sbjct: 126 LDLNSATRPPRYTPTPSYTSTTSYTSTTSYTPTTSYTPTPSYTSTTSYT-STTSYTSTTS 184
Query: 266 FVPSYGH----KHYNTTSYNHSRSLPRMSSW 346
+ P+ + + +TTSY + S +S+
Sbjct: 185 YTPTPSYTSTPSYTSTTSYTCTTSYTSTTSY 215
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 27.5 bits (58), Expect = 3.8
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +2
Query: 128 TPAVFCGSPSRAST-AYIPTGI*SPRCTFSATTSGV*SI-WCSSSETGFVPSYGH--KHY 295
TP+ + +PS ST +Y PT +P ++++TTS + + S++ PSY +
Sbjct: 119 TPS-YTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYT 177
Query: 296 NTTSYNHSRSLPRMSSW 346
+TTSY + S +S+
Sbjct: 178 STTSYTSTTSYTSTTSY 194
>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 293 YNTTSYNHSRSLPRMSSWH 349
Y+TT H R + R+SSWH
Sbjct: 19 YSTTLKPHERIMGRLSSWH 37
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 269 VPSYGHKHYNTTSYNHSRSLPRMSSWHFRRRFHVPR 376
VP+ + Y +N R+ P M SWH + H P+
Sbjct: 609 VPNLQEQMYQAFQFNPMRA-PYMGSWHSQPPMHFPQ 643
>SB_43933| Best HMM Match : Allexi_40kDa (HMM E-Value=7.1)
Length = 212
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +1
Query: 133 RRILRQSLQGFNRIHTHRHLIPQVHLFRHHLRGIVHMVLLLRNRL 267
R +LRQS+Q F ++ H++ ++ R + ++ ++ + L
Sbjct: 108 RPLLRQSIQNFRQLPNSTHVVKRLVTLRQEVTDLMAIITMATRNL 152
>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 26.2 bits (55), Expect = 8.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 281 RSLVQSLFLRRSTIWTIPRRWWRKRCTWGIRCLWVCMRLKPWRD-CRRIRRGLLGHSWFL 105
R+ + S L S WT R ++ T+ +RCL R+ W D R R + SW
Sbjct: 618 RACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRIPRIH-WSDKLRNTRSSKIRLSWLG 676
Query: 104 H 102
H
Sbjct: 677 H 677
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 278 YGHKHYNTTSYNHSRSLPRMSSWHF--RRRFHVPR 376
Y H+ T +RSLP SW R HVPR
Sbjct: 430 YPLTHFRTHGPGVTRSLPHTCSWALPAHYRIHVPR 464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,127
Number of Sequences: 59808
Number of extensions: 265114
Number of successful extensions: 707
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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