Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20416
         (377 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062370-1|AAH62370.1|  125|Homo sapiens brain protein I3 protein.     38   0.011
BC018737-1|AAH18737.1|  125|Homo sapiens brain protein I3 protein.     38   0.011
AF106966-1|AAD05167.1|  125|Homo sapiens I3 protein protein.           38   0.011
AF041430-1|AAF18565.2|  125|Homo sapiens pRGR2 protein.                38   0.011
AB055977-1|BAB32785.1|  125|Homo sapiens I3 protein protein.           38   0.011
M17653-1|AAA60634.1|  109|Homo sapiens TCRA protein.                   30   2.2  
AK024458-1|BAB15748.1|  270|Homo sapiens FLJ00050 protein protein.     29   3.8  
X08006-1|CAA30807.1|  497|Homo sapiens cytochrome P450 db1 protein.    29   5.0  
M20403-1|AAA52153.1|  497|Homo sapiens CYP2D protein.                  29   5.0  
U80457-1|AAB62397.1|  570|Homo sapiens transcription factor SIM2...    29   6.6  
U80456-1|AAB62396.1|  667|Homo sapiens transcription factor SIM2...    29   6.6  
BC150262-1|AAI50263.1| 1516|Homo sapiens RUN and SH3 domain cont...    29   6.6  
BC146654-1|AAI46655.1| 1516|Homo sapiens RUSC2 protein protein.        29   6.6  
BC132770-1|AAI32771.1| 1516|Homo sapiens RUN and SH3 domain cont...    29   6.6  
BC132766-1|AAI32767.1| 1516|Homo sapiens RUN and SH3 domain cont...    29   6.6  
BC110444-1|AAI10445.1|  570|Homo sapiens single-minded homolog 2...    29   6.6  
BC064843-1|AAH64843.1| 1301|Homo sapiens RUSC2 protein protein.        29   6.6  
AP000697-1|BAA89433.1|  667|Homo sapiens single-minded 2 protein...    29   6.6  
AL133476-3|CAH70650.1| 1516|Homo sapiens RUN and SH3 domain cont...    29   6.6  
AJ001858-1|CAA05055.1|  463|Homo sapiens human SIM2 protein.           29   6.6  
AB003185-2|BAA21490.1|  181|Homo sapiens SIM2s protein.                29   6.6  
AB003185-1|BAA21489.1|  278|Homo sapiens SIM2 protein.                 29   6.6  
AB002373-1|BAA20830.2| 1540|Homo sapiens KIAA0375 protein protein.     29   6.6  

>BC062370-1|AAH62370.1|  125|Homo sapiens brain protein I3 protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           VG CP CRVG+LED FT LG
Sbjct: 75  VGGCPVCRVGVLEDCFTFLG 94


>BC018737-1|AAH18737.1|  125|Homo sapiens brain protein I3 protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           VG CP CRVG+LED FT LG
Sbjct: 75  VGGCPVCRVGVLEDCFTFLG 94


>AF106966-1|AAD05167.1|  125|Homo sapiens I3 protein protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           VG CP CRVG+LED FT LG
Sbjct: 75  VGGCPVCRVGVLEDCFTFLG 94


>AF041430-1|AAF18565.2|  125|Homo sapiens pRGR2 protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           VG CP CRVG+LED FT LG
Sbjct: 75  VGGCPVCRVGVLEDCFTFLG 94


>AB055977-1|BAB32785.1|  125|Homo sapiens I3 protein protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           VG CP CRVG+LED FT LG
Sbjct: 75  VGGCPVCRVGVLEDCFTFLG 94


>M17653-1|AAA60634.1|  109|Homo sapiens TCRA protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 190 DACGYVCG*SPGGTAAEYGGGCSVTVGFSIK 98
           D+  Y+C   PGGTA  +G G +++V  +I+
Sbjct: 77  DSATYLCAPKPGGTALIFGKGTTLSVSSNIQ 107


>AK024458-1|BAB15748.1|  270|Homo sapiens FLJ00050 protein protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 185 LWVCMRLKPWRDCRRIRRGLLGH 117
           LWV  R+K W  C  +R GL+ H
Sbjct: 221 LWVAQRIKMWPPCFPVRSGLVLH 243


>X08006-1|CAA30807.1|  497|Homo sapiens cytochrome P450 db1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 KPVSEEEHHMDYTPEVVAEKVHLGD*MPVGM 175
           +P   ++ HM YT  V+ E    GD +P+GM
Sbjct: 344 RPEMGDQAHMPYTTAVIHEVQRFGDIVPLGM 374


>M20403-1|AAA52153.1|  497|Homo sapiens CYP2D protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 KPVSEEEHHMDYTPEVVAEKVHLGD*MPVGM 175
           +P   ++ HM YT  V+ E    GD +P+GM
Sbjct: 344 RPEMGDQAHMPYTTAVIHEVQRFGDIVPLGM 374


>U80457-1|AAB62397.1|  570|Homo sapiens transcription factor SIM2
           short form protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 411 PPASAAAPPELQPHS 425


>U80456-1|AAB62396.1|  667|Homo sapiens transcription factor SIM2
           long form protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 411 PPASAAAPPELQPHS 425


>BC150262-1|AAI50263.1| 1516|Homo sapiens RUN and SH3 domain
           containing 2 protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 806 EQPTATESLPPWSHSCPSAVRPAT 829


>BC146654-1|AAI46655.1| 1516|Homo sapiens RUSC2 protein protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 806 EQPTATESLPPWSHSCPSAVRPAT 829


>BC132770-1|AAI32771.1| 1516|Homo sapiens RUN and SH3 domain
           containing 2 protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 806 EQPTATESLPPWSHSCPSAVRPAT 829


>BC132766-1|AAI32767.1| 1516|Homo sapiens RUN and SH3 domain
           containing 2 protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 806 EQPTATESLPPWSHSCPSAVRPAT 829


>BC110444-1|AAI10445.1|  570|Homo sapiens single-minded homolog 2
           (Drosophila) protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 411 PPASAAAPPELQPHS 425


>BC064843-1|AAH64843.1| 1301|Homo sapiens RUSC2 protein protein.
          Length = 1301

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 591 EQPTATESLPPWSHSCPSAVRPAT 614


>AP000697-1|BAA89433.1|  667|Homo sapiens single-minded 2 protein
           protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 411 PPASAAAPPELQPHS 425


>AL133476-3|CAH70650.1| 1516|Homo sapiens RUN and SH3 domain
           containing 2 protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 806 EQPTATESLPPWSHSCPSAVRPAT 829


>AJ001858-1|CAA05055.1|  463|Homo sapiens human SIM2 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 348 PPASAAAPPELQPHS 362


>AB003185-2|BAA21490.1|  181|Homo sapiens SIM2s protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 22  PPASAAAPPELQPHS 36


>AB003185-1|BAA21489.1|  278|Homo sapiens SIM2 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 PPYSAAVPPGLQPHT 176
           PP SAA PP LQPH+
Sbjct: 22  PPASAAAPPELQPHS 36


>AB002373-1|BAA20830.2| 1540|Homo sapiens KIAA0375 protein protein.
          Length = 1540

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 EKPTVTEQPPPYSAAVPPGLQPHT 176
           E+PT TE  PP+S + P  ++P T
Sbjct: 830 EQPTATESLPPWSHSCPSAVRPAT 853


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,295,449
Number of Sequences: 237096
Number of extensions: 1270359
Number of successful extensions: 3830
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)