Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20416
         (377 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025823-1|ABF85723.1|   81|Drosophila melanogaster IP05417p pro...    35   0.030
AE014296-657|AAF47770.2|  122|Drosophila melanogaster CG12012-PA...    35   0.030
EF057934-1|ABL84869.1|  668|Drosophila melanogaster Nup75 protein.     27   6.1  
BT001618-1|AAN71373.1|  623|Drosophila melanogaster RE35195p pro...    27   6.1  
AY128450-1|AAM75043.1|  459|Drosophila melanogaster LD44026p pro...    27   6.1  
AE014134-1787|AAN10725.1|  623|Drosophila melanogaster CG5694-PB...    27   6.1  
AE014134-1786|AAF52878.2|  623|Drosophila melanogaster CG5694-PA...    27   6.1  
AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA...    27   8.0  

>BT025823-1|ABF85723.1|   81|Drosophila melanogaster IP05417p
           protein.
          Length = 81

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           +G CPACR+G LED F+  G
Sbjct: 32  IGGCPACRIGYLEDTFSACG 51


>AE014296-657|AAF47770.2|  122|Drosophila melanogaster CG12012-PA
           protein.
          Length = 122

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 318 VGACPACRVGILEDDFTCLG 377
           +G CPACR+G LED F+  G
Sbjct: 73  IGGCPACRIGYLEDTFSACG 92


>EF057934-1|ABL84869.1|  668|Drosophila melanogaster Nup75 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 373 RHVKSSSK-MPTRHAGQAPTVI 311
           RHVK SS+  PT +AGQ P +I
Sbjct: 39  RHVKHSSRDEPTENAGQVPVLI 60


>BT001618-1|AAN71373.1|  623|Drosophila melanogaster RE35195p
           protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 200 RCTFSATTSGV*SIWCSSSETGFVPSYGH-KHYNTTSYNHSRSLPRMSSWH 349
           RCT  +  +       S+S T F  S GH K YN  + N S++L  ++ W+
Sbjct: 532 RCTVDSIANHSLVGSLSTSNT-FADSEGHRKEYNQENCNFSKNLVALTDWY 581


>AY128450-1|AAM75043.1|  459|Drosophila melanogaster LD44026p
           protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 200 RCTFSATTSGV*SIWCSSSETGFVPSYGH-KHYNTTSYNHSRSLPRMSSWH 349
           RCT  +  +       S+S T F  S GH K YN  + N S++L  ++ W+
Sbjct: 368 RCTVDSIANHSLVGSLSTSNT-FADSEGHRKEYNQENCNFSKNLVALTDWY 417


>AE014134-1787|AAN10725.1|  623|Drosophila melanogaster CG5694-PB,
           isoform B protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 200 RCTFSATTSGV*SIWCSSSETGFVPSYGH-KHYNTTSYNHSRSLPRMSSWH 349
           RCT  +  +       S+S T F  S GH K YN  + N S++L  ++ W+
Sbjct: 532 RCTVDSIANHSLVGSLSTSNT-FADSEGHRKEYNQENCNFSKNLVALTDWY 581


>AE014134-1786|AAF52878.2|  623|Drosophila melanogaster CG5694-PA,
           isoform A protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 200 RCTFSATTSGV*SIWCSSSETGFVPSYGH-KHYNTTSYNHSRSLPRMSSWH 349
           RCT  +  +       S+S T F  S GH K YN  + N S++L  ++ W+
Sbjct: 532 RCTVDSIANHSLVGSLSTSNT-FADSEGHRKEYNQENCNFSKNLVALTDWY 581


>AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA
           protein.
          Length = 1998

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 163 SPGGTAAEYGGGCSVTVG 110
           SPGG +   GGGCS ++G
Sbjct: 258 SPGGGSGSQGGGCSNSLG 275


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,569
Number of Sequences: 53049
Number of extensions: 376647
Number of successful extensions: 1454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)