Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20416
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   4.5  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   4.5  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        27   4.5  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    26   7.8  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    26   7.8  
AF067609-10|AAC17537.1|  163|Caenorhabditis elegans Ground-like ...    26   7.8  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 116  CDRATPAVFCGSPSRASTAYIPTGI*SPRCTFSATTSGV*SIWCSSSE 259
            CDR +  V  G+P + + +  P+G    +CTFS  +    + +C SS+
Sbjct: 1411 CDRGSAYVVNGTPKQCTASPCPSGY---KCTFSKKSK---NYYCCSSK 1452


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 359  VF*NANSTCGASSDCDYSWW 300
            +F N NS C  SS  DYS+W
Sbjct: 1336 MFCNMNSVCHVSSRNDYSFW 1355


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 359  VF*NANSTCGASSDCDYSWW 300
            +F N NS C  SS  DYS+W
Sbjct: 1593 MFCNMNSVCHVSSRNDYSFW 1612


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 359  VF*NANSTCGASSDCDYSWW 300
            +F N NS C  SS  DYS+W
Sbjct: 1592 MFCNMNSVCHVSSRNDYSFW 1611


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 359 VF*NANSTCGASSDCDYSWW 300
           +F N NS C  SS  DYS+W
Sbjct: 147 MFCNMNSVCHVSSRNDYSFW 166


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 16  KNFSHKAF*QISLDNVSPSFILTTN 90
           K F H+    IS++ VSP F+L  N
Sbjct: 663 KEFEHRFETSISVEKVSPPFLLNNN 687


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 127 NPRRILRQSLQGFN--RIHTHRHLIPQVHLFRHHLRGIVHMVLLLRNRLCTKLR-PQTL* 297
           +P ++LR+  +  +  R  T R L  Q   F HH+R + H+  L   R    +R  +   
Sbjct: 676 DPEQVLREQRERLDKERAETQRRLQQQEKNFDHHVRAL-HLEELNERRAVMNMRLSEAPK 734

Query: 298 YHQL*SQSELAPHV 339
            H L  ++ +A  +
Sbjct: 735 LHDLYEEARIAKEI 748


>AF067609-10|AAC17537.1|  163|Caenorhabditis elegans Ground-like
           (grd related) protein20 protein.
          Length = 163

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 184 CGYVCG*SPGGTAAEYGGGCSVTVGFSI 101
           CG  CG   GG     GGGC  T+G S+
Sbjct: 28  CGGGCG---GGCGGGGGGGCLPTLGCSV 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,353
Number of Sequences: 27780
Number of extensions: 183287
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)