Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20416
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   8.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   8.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 333 ACRVGILEDDFTCLG 377
           AC VG+LE  F CLG
Sbjct: 151 AC-VGLLERAFRCLG 164


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 248 SSSETGFVPSYGHKHYNTTSYNHSRSLPRMSSWH 349
           S S T   PSY   +YN       +S P +++ +
Sbjct: 532 SKSSTETPPSYNQLNYNENIERFFKSKPPVATMY 565


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 352 KMPTRHAGQAPTVIIAGGIIMFVAVAWY 269
           ++ TR+ G+A  +I+   I+  VAV +Y
Sbjct: 364 RVGTRYPGRADHMIMLEMILPGVAVTYY 391


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 275 SYGHKHYNTTSYNHSRSL 328
           +Y + +YN  +YN+ + L
Sbjct: 100 NYNNYNYNNNNYNNYKKL 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 125  ATPAVFCGSPSRASTAYIPTGI*SPRCT 208
            A PA  CG+ S      +P     PR T
Sbjct: 1268 APPAYSCGTVSVPQQQQLPPSSPQPRLT 1295


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 125 ATPAVFCGSPSRASTA 172
           +T  + CGSP  A+ A
Sbjct: 443 STTVILCGSPPSANIA 458


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 239 WTIPRRWWRKRCTWGIRCLWVC 174
           +T P +  R+R    I  +W+C
Sbjct: 152 FTYPSKMSRRRAAVLIAIVWIC 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,415
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)