Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20416
(377 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 30 0.44
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 30 0.59
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 29 1.0
At5g45860.1 68418.m05641 Bet v I allergen family protein low sim... 29 1.4
At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) / m... 28 1.8
At1g60340.1 68414.m06794 apical meristem formation protein-relat... 28 1.8
At4g27320.1 68417.m03920 universal stress protein (USP) family p... 27 3.1
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 27 3.1
At5g39820.1 68418.m04823 no apical meristem (NAM) family protein... 27 4.1
At1g65410.1 68414.m07421 ABC transporter family protein contains... 27 4.1
At1g60300.1 68414.m06790 apical meristem formation protein-relat... 27 4.1
At5g42905.1 68418.m05230 hypothetical protein 27 5.5
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro... 27 5.5
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 26 7.2
At3g56160.1 68416.m06242 expressed protein 26 7.2
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 26 7.2
At4g10880.1 68417.m01771 hypothetical protein predicted proteins... 26 9.6
At2g36330.1 68415.m04459 integral membrane protein, putative con... 26 9.6
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 26 9.6
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 26 9.6
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 153 GLPQNTAGVARSQL---VSPLN*IISSQNK*WRYVI*RNLLKCLVRKVFQTQFM 1
GLP N AG+ +SQL +S + +I ++ R ++ RN L L + +FQ Q M
Sbjct: 11 GLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPL--LTKALFQAQIM 62
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +3
Query: 105 EKP-TVTEQPPPY-SAAVPPGLQPHT 176
EKP +V QPPP+ +AA PGL P T
Sbjct: 47 EKPGSVNSQPPPWRAAAAAPGLSPKT 72
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +3
Query: 111 PTVTEQPPPYSAAV---PPGLQPHTY 179
P VT PPPY V PP PHT+
Sbjct: 36 PVVTAAPPPYQPPVSSQPPSPSPHTH 61
>At5g45860.1 68418.m05641 Bet v I allergen family protein low
similarity to SP|P27538 Pathogenesis-related protein 2
{Petroselinum crispum}
Length = 161
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 296 YNVCGRSLVQSLFLRRSTIWTIPRRW 219
Y+ CG +LVQ++ S +W+I RR+
Sbjct: 7 YHTCGSTLVQTIDAPLSLVWSILRRF 32
>At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) /
multidrug transporter-like protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296, putative multidrug efflux protein NorM -
Vibrio parahaemolyticus, EMBL:AB010463; contains Pfam
profile PF01554: Uncharacterized membrane protein
family; identical to cDNA multidrug transporter-like
protein (tt12) GI:13624642, SP|Q9LYT3 TRANSPARENT TESTA
12 protein {Arabidopsis thaliana}, multidrug
transporter-like protein [Arabidopsis thaliana]
GI:13624643
Length = 507
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 260 FLRRSTIWTIPRRWWRKRCTWGIRCLW 180
FLRR T+ RWW K W + LW
Sbjct: 31 FLRRRGS-TVTPRWWLKLAVWESKLLW 56
>At1g60340.1 68414.m06794 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 371
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 347 ANSTCGASSDCDYSWWYYNVCGRSLVQSLF 258
AN TCG S CD +W + G L++S F
Sbjct: 236 ANGTCGESDKCDGGYWKI-LHGDKLIKSNF 264
>At4g27320.1 68417.m03920 universal stress protein (USP) family
protein low similarity to ER6 protein [Lycopersicon
esculentum] GI:5669654, early nodulin ENOD18 [Vicia
faba] GI:11602747; contains Pfam profile PF00582:
universal stress protein family
Length = 260
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 90 LFSLMEKPTVTEQPPPYSAAVPPGLQP 170
LF P + PPP SAA PG QP
Sbjct: 86 LFGADWGPLPLQTPPPPSAATDPGAQP 112
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 377 TEAREIVF*NANSTCGASSDCDYSWWYYNV 288
T+ E+VF N S CG S + +Y+N+
Sbjct: 601 TKPNEVVFMNVLSACGHSGSVEEGKYYFNL 630
>At5g39820.1 68418.m04823 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC domain protein NAM, Arabidopsis thaliana,
gb:AAD17313
Length = 334
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 248 SSSETGFVPSYGHKHYNTTSYNHSRSLPRMSSWHFRRRF 364
S S P+Y +K + + N+S+ LP +W R F
Sbjct: 148 SDSHHSSYPNYNNKKQHLNNNNNSKELPSNDAWAICRIF 186
>At1g65410.1 68414.m07421 ABC transporter family protein contains
similarity to toluene tolerance protein Ttg2A GI:4336798
from [Pseudomonas putida]
Length = 345
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 236 SIWCSSSETGFVPSYGHKHYNTTSYNHSRSLPRMSSWHFRRR 361
S+ CSSS + +P HY+ +S S +PR S FRR+
Sbjct: 3 SLSCSSSSSSLLPP--SLHYHGSSSVQSIVVPRRSLISFRRK 42
>At1g60300.1 68414.m06790 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 322
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 347 ANSTCGASSDCDYSWWYYNVCGRSLVQSLF 258
AN TCG + CD +W + G L++S F
Sbjct: 237 ANKTCGETDKCDGGYWKI-LHGDKLIKSNF 265
>At5g42905.1 68418.m05230 hypothetical protein
Length = 258
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 311 YSWWYYNVCGRSLVQSLFLRRSTIWTIPRRW-WRKRCT 201
+ W Y N+C RS + + STI+ + W W+ RC+
Sbjct: 59 FEWLYDNLCDRSSCED--IPWSTIFAVIIWWGWKWRCS 94
>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 734
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 305 WWYYNVCGRSLVQSLFLRRSTIWTIPRRWW 216
WW+Y++ SLV SL L I WW
Sbjct: 414 WWFYSLLAISLVLSLVLCIFMKDEIQMPWW 443
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 26.2 bits (55), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 311 YSWWYYNVCGRSLV 270
+ WWY+ VC SL+
Sbjct: 170 FQWWYFGVCAGSLL 183
>At3g56160.1 68416.m06242 expressed protein
Length = 436
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 347 ANSTCGASSDCDYSWWYYNVCGRSLVQSLFLRRSTIWTIPRRW 219
AN T G +D YS+ + CG ++ L LR I + W
Sbjct: 123 ANPTLGCLAD-KYSFTKISTCGIFIISGLTLRTEAIGAAVKGW 164
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 236 SIWCSSSETGFVPSYGHKHYNTTSYNHSRSL 328
S+ SSS T P H+ N+ YNH+ SL
Sbjct: 780 SLSVSSSSTRKKPPRSHEAANSRGYNHTPSL 810
>At4g10880.1 68417.m01771 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 172
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 IWCSSSETGFVPSYGH-KHYNTTSYNH 316
IWC +++ G S GH K+Y + H
Sbjct: 105 IWCKTNDLGIYQSDGHLKYYKSVIARH 131
>At2g36330.1 68415.m04459 integral membrane protein, putative
contains 4 transmembrane domains; contains Pfam PF04535
: Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 431
Score = 25.8 bits (54), Expect = 9.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 187 HLIPQVHLFRHHLRGIVHMVL 249
HL+ + HL HHLR + ++
Sbjct: 355 HLVKEKHLISHHLRPLFEFII 375
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 111 PTVTEQPPPYSAAVPPGLQP 170
P VT PPP + A PP P
Sbjct: 52 PPVTTSPPPVTTAPPPANPP 71
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 111 PTVTEQPPPYSAAVPPGLQP 170
P VT PPP + A PP P
Sbjct: 52 PPVTTSPPPVTTAPPPANPP 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,944
Number of Sequences: 28952
Number of extensions: 174245
Number of successful extensions: 589
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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