Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20414
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.7  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.2  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 521 KSLMRYWYFLLPN 483
           K +MR WY+LL N
Sbjct: 33  KRMMRSWYYLLTN 45


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 510 ALLVFSSTQSLIDLAATVFFEKS 442
           A L+F +T   +D   T+ +EK+
Sbjct: 223 AFLIFFATLDFLDNVDTIMYEKT 245


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 111 SIFEHIREICDGCHCRDGDSKQTNDCLHVC 22
           SIF  +  IC+ C+    + +  N C   C
Sbjct: 60  SIFAKLDSICEDCYMLFREPQLHNLCRSEC 89


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -1

Query: 286 YSIVVREADSF 254
           YSI++++ADSF
Sbjct: 306 YSILIKKADSF 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,990
Number of Sequences: 336
Number of extensions: 2806
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)