Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20414
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   0.93 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.2  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    26   3.8  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   5.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   6.6  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   6.6  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   8.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 366 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIASKA 247
           TY+   I SS+ L+   S L++++S  +ASSS  PI S +
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIPSSS 703


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 296 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 391
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 301 REFCSYSIVVREADSFKSSSWVSPSE 224
           RE  +   VV E+DS K   W+ PS+
Sbjct: 49  REISTIPKVVTESDSGKEEKWIYPSQ 74


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 12  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 110
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 492  STQSLIDLAATVFFEKSIFWTSE 424
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = -2

Query: 249 ALHGFHHQK-LKLTEREEAAPKMPRGQRFSLDFFHYFGKHSGCEVIVSIFE----H--IR 91
           ALHG      L  TE+  A     +     L +F + GK   C VI+  ++    H  + 
Sbjct: 150 ALHGIDSASALSCTEKNRALHLEKKALNCLLSYFAFKGKLDICSVILQSYQLSIPHSPLM 209

Query: 90  EICDGCHCRDGDSKQT 43
            + D   CR GD+++T
Sbjct: 210 RMYD-AFCRLGDTQKT 224


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
 Frame = +2

Query: 293 EFASKSRDLR--SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKN--- 457
           E A K + L+  ++  V+ +   K+  HD   LDE    +  +    D+   +  +N   
Sbjct: 100 ELALKEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEERIAEDIAQNEVEQNIDD 159

Query: 458 TVAAKSINDWVEENTNNALRI*LIRTRSAQPQRVFSSTPSISREHGVLNFDS 613
               + +ND ++ N  +  +I  I    A    +  S+ S S E   LN  S
Sbjct: 160 VEDLEEVNDTLDANAESP-QIETIHLTDATGNPIEDSSESDSEESLQLNDSS 210


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 85  NLSNVLKNGNDNFTARMFTEVV 150
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,739
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)