Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20414
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 44 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 41 7e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.001
01_01_1152 + 9170628-9171899 40 0.001
11_02_0012 - 7346282-7347136,7347234-7347593 39 0.004
11_01_0771 + 6453130-6454488 36 0.019
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.026
11_02_0014 - 7352619-7352918,7353173-7353418 35 0.059
11_01_0767 + 6438648-6438809,6439146-6440000 35 0.059
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.2
06_03_0300 + 19299378-19299688,19299839-19300268 29 2.9
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 3.9
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 3.9
10_05_0102 - 9176459-9176767,9176793-9176858 29 3.9
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 29 3.9
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 5.1
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 28 5.1
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 28 5.1
04_04_0210 + 23616407-23618851 28 6.8
12_01_1034 - 10638984-10639376,10639905-10640093 27 8.9
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 8.9
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 8.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 508 RIKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
RIKD + D++ AT VL NA+YFKG W SKF
Sbjct: 156 RIKDFLPKDAVDRATPAVLGNALYFKGDWESKF 188
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
IK++ P S++ T VL NA+YFKGAW+ KF
Sbjct: 481 IKNIATPRSINHNTKLVLANALYFKGAWAEKF 512
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
IK+++ P S+ T VL NA+YFKGAW+ KF
Sbjct: 229 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 260
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
IK+++ P S+ T VL NA+YFKGAW+ KF
Sbjct: 21 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 52
>01_01_1152 + 9170628-9171899
Length = 423
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I+D++ P+S+ S+T VL NA++FKG WS F
Sbjct: 175 IRDVLPPNSVDSSTVVVLANAVHFKGTWSLPF 206
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I++++ S+ TA VLVNAIYFKG WS+ F
Sbjct: 140 IREILPDGSVHGGTALVLVNAIYFKGKWSNPF 171
>11_01_0771 + 6453130-6454488
Length = 452
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I D++ P S+ TA VL NAIYFKG W F
Sbjct: 189 ITDVLPPRSVGPETAVVLGNAIYFKGKWDRPF 220
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I +++ S+ TA VLVNAIYFKG WS+ F
Sbjct: 152 IPEILPDGSVHVDTALVLVNAIYFKGKWSNPF 183
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I +++ S+ T VLVNAIYFKG WS F
Sbjct: 102 IPEILPDGSVHRLTTLVLVNAIYFKGKWSDPF 133
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
I +++ P+S S T V+ NAIYFKG W + F
Sbjct: 74 ITEVIKPESQSVDTRHVVGNAIYFKGEWLAPF 105
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +2
Query: 272 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 397
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>06_03_0300 + 19299378-19299688,19299839-19300268
Length = 246
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -2
Query: 171 RFSLDFFHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTNDCLH 28
+ +DF F K CE I+ +++ + + CR D+K H
Sbjct: 102 KICIDFMGPFPKSYDCEYILVAVDYVSKWVEAMPCRAADAKHARQMFH 149
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 290 TEFASKSRDLRSIKGVELKMANKVYVHDG 376
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 174 VLSAFSVLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVTFDQLKALSL 344
+ + SV L +L+L S + + AS +LY+ N+R ++ F LK S+
Sbjct: 1616 ITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSV 1672
>10_05_0102 - 9176459-9176767,9176793-9176858
Length = 124
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 225 KLKLTEREEAAPKMPRGQRFSLDFFHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSK 49
KL R +P +F +DF F K CE I+ +++ + + C D++
Sbjct: 3 KLPKARRNHCSPCNAPHIQFGIDFMGPFPKSRNCEYILVAVDYVSKWVEAMSCSAADAR 61
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -2
Query: 321 RRSRLLLANSVRIASSSGKPIASKALHGFHHQKLKLTEREEAAPKMPRGQRFSLDFFHYF 142
RR RLL ++ + SSS P+ S + L +R+E AP P SL F
Sbjct: 200 RRRRLLSRFALHLLSSSSPPLPSSV----RRARAALADRDERAPASPPPPLPSLPFDQPR 255
Query: 141 GKHSGCEVIV 112
+ SG ++
Sbjct: 256 DRVSGAATVL 265
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 330 LIDRRSRLLLANSVRIASSSGK 265
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 28.3 bits (60), Expect = 5.1
Identities = 29/106 (27%), Positives = 44/106 (41%)
Frame = -2
Query: 321 RRSRLLLANSVRIASSSGKPIASKALHGFHHQKLKLTEREEAAPKMPRGQRFSLDFFHYF 142
R +RL + + S G A + + L+L E + + +R S + +
Sbjct: 143 RCARLAAKDFAAVERSEGWRFARRHDAALELEILQLLEDADQRRERWARERASREAYRQL 202
Query: 141 GKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTNDCLHVCGLRLLV 4
G E + S+ EHI DGC C D D+ D GLRLL+
Sbjct: 203 G-----EAMDSL-EHIFSD-DGCSCADADADADTDAPPCRGLRLLM 241
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 315 SRLLLANSVRIASSSGKPIASKALHGFHHQKLKLTEREEAAPK 187
+RLL N + SS +P+ + H QK+ L + E A P+
Sbjct: 1792 TRLLAVNGGLVPESSLRPLIGRNSHILKQQKINLLDIEAALPE 1834
>04_04_0210 + 23616407-23618851
Length = 814
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 306 LLANSVRIASSSGKPIASKALHGFHHQKLKLTEREEAAPKMPRGQRFSLDFFHYFGKHSG 127
+L R A I S+A+ + +L R AA + Q FSL+ F + +HS
Sbjct: 299 VLVIEARAAHPGKDEIVSRAVLPLTLFERRLDRRGAAAATHTQSQWFSLEPFVHRPRHSP 358
Query: 126 CEVIVSIFEHIREICDGC-HCRDGDSKQTND 37
E + H+R DG H D + +D
Sbjct: 359 EEPAFAGRVHLRACLDGAYHVMDEPAMYASD 389
>12_01_1034 - 10638984-10639376,10639905-10640093
Length = 193
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 168 FSLDFFHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTNDCLH 28
+ +DF F K CE I+ +++ + +G CR ++K H
Sbjct: 98 WGIDFIGPFPKSYDCEYILMAVDYVSKWVEGMPCRATEAKHACRMFH 144
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 290 TEFASKSRDLRSIKGVELKMANKVYVHDG 376
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 254 EAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVV 406
E + F DD+ ++ + SRD R + VE+K + +++FAV+
Sbjct: 95 EPVDFNDDEPLQLIESGDSRDARCSRAVEIKTYPEFSAIPQSSSEDDFAVL 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,750
Number of Sequences: 37544
Number of extensions: 307032
Number of successful extensions: 911
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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