Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20414
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      44   7e-05
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      42   4e-04
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      36   0.034
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       30   1.7  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              28   6.9  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   6.9  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   9.1  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     27   9.1  
SB_11| Best HMM Match : E6 (HMM E-Value=2.2)                           27   9.1  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +2

Query: 266 FPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNID 445
           FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++  +D
Sbjct: 62  FPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVD 121

Query: 446 FSKNTVAAK-SINDWVEENTNNALR 517
           + KN+  A+ ++N WVE+ T + ++
Sbjct: 122 YVKNSNGARDTVNRWVEQKTKDKIK 146



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 493 RKYQ*RIKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
           +K + +IK+L+     +  T   LVNA+YFKG+W   F
Sbjct: 139 QKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHF 176


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +2

Query: 338 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNAL 514
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   +
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 515 R 517
           +
Sbjct: 114 K 114



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 511 IKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
           IK+L+    ++S T  ++VNA+YFKG W  +F
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEF 144


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 508 RIKDLVNPDSLSSATAGVLVNAIYFKGAWSSKF 606
           +I DL+ P   +  T   LVNAIYFKG W   F
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139



 Score = 35.1 bits (77), Expect = 0.046
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 338 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNAL 514
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T   +
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
 Frame = +2

Query: 248 AFEAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 427
           AF    F  DD +  E  S+++D  +++    K    +      K +E+  + S  +F+ 
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473

Query: 428 DVQNIDFSKNTVAAKSINDW---VEENTNNALR 517
           + +N+DFS +     ++ DW   VE    N+LR
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVENTMRNSLR 506


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 75  CHCRDGDSKQTNDCL 31
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 192  VLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVTFDQLKALS 341
            +LPPLA L  +++G T    L++ + +++ +Y  NS V + + D    L+
Sbjct: 993  ILPPLASLVSSTNGNTRMLCLRMFSDVSS-IYLDNSNVCSSSSDNGSVLT 1041


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 141 RSSEKNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKLSAS 269
           R+  +NPG   +  AF  +  L ++ +  +G  HE +  L+ S
Sbjct: 396 RNRLENPGSKCLAEAFKTIGTLVEVQMPQNGIQHEGITALAES 438


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRFSL 160
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRFSL 160
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRFSL 160
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRFSL 160
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRFSL 160
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 373  WWKTRREFCSRFQGRLQFGRPK 438
            W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 231 HQKLKLTEREEAAPKMPRGQRF 166
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 222  ASDGETHEELLKLSASLTTMLYEQNSRVKAVTFDQ 326
            A + E H  + +L A +TT+  E  +++KA ++++
Sbjct: 1134 AKEKELHTNIKELEAKITTLTEESQAKLKASSYEK 1168


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -2

Query: 228  QKLKLTEREEAAPKMPRGQRFSLDFFHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSK 49
            +K K TE E+A P+  R +    D   +F ++ GC      F  +    D   CRD D K
Sbjct: 1631 RKKKKTEGEDAKPQKKRAKSKEPDE-EFFIQNGGCVK----FPKLPRCRD---CRDKDDK 1682

Query: 48   QTNDC 34
              +DC
Sbjct: 1683 SPSDC 1687


>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
          Length = 485

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 188 KCREDNAFPWIFF 150
           KC+ D+ FPW+FF
Sbjct: 142 KCKLDSGFPWLFF 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,708
Number of Sequences: 59808
Number of extensions: 352053
Number of successful extensions: 1146
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)