Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20414
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.44 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 475 RLSCDCILREINILD 431
           +L C+CIL+  NILD
Sbjct: 60  QLYCECILKNFNILD 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 407 SRDVFNSDVQNIDFSKNTVAAKSIND 484
           S ++  +  QNID +KNT+     ND
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNND 435


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 425 SDVQNIDFSKNTVAAKSINDWVEENTNNALR 517
           S+++ I  S + V       W++EN+  AL+
Sbjct: 184 SNIKVISISPDLVETDMTAQWLKENSRLALK 214


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 159 PGKSVVLSAFSVLPPLAQLALASDGET 239
           P K +   AF   PPL + A+    +T
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQT 432


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 560 TPAVAELSESGLTKSLMRYW 501
           T A+ +  ESG  +SL  +W
Sbjct: 780 TLAILDFHESGFMESLDNHW 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,623
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)