Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20413
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    47   3e-04
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   1.9  
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12...    32   5.8  
UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole...    32   7.7  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 46.8 bits (106), Expect = 3e-04
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 186 IYGTGGLLTPLVAPVLGFSSAGI 254
           IYGTGGLLTP+VAP+LGF SAGI
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGI 39



 Score = 36.7 bits (81), Expect = 0.27
 Identities = 15/20 (75%), Positives = 20/20 (100%)
 Frame = +2

Query: 299 LVAGSIVSQLTAAAMVAPTP 358
           +VAGS++SQLT+AAM+APTP
Sbjct: 55  VVAGSVISQLTSAAMLAPTP 74


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 122 QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 235
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
           Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
           Bacillus subtilis
          Length = 215

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 LRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSIS 220
           L + R   K+KEHG  + +S   G   CN   +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156


>UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF3766,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 328

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 231 AREPLMESTDPQCHILQHRRPRLPLMQLE 145
           A +PL   T+P+  +LQ+RRP+L L  L+
Sbjct: 5   AEQPLSLRTEPKLRVLQYRRPKLELQLLK 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,279,794
Number of Sequences: 1657284
Number of extensions: 7997854
Number of successful extensions: 18604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18600
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)