Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20413
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     29   2.0  
09_06_0231 + 21733151-21734905                                         28   3.4  
12_02_1180 + 26727171-26727239,26728782-26729642                       28   4.5  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.5  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   6.0  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   7.9  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +1

Query: 235 VSAQREYGRKHSRCCTSILRKFSGR------QHCVTVDCCC 339
           + ++++ G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 18  LDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 375 CLASPHGVGATMAAAVNCDTMLPATKFP 292
           CL  P GVGA       CD M PAT  P
Sbjct: 47  CLRLPLGVGAGGCRVCACDEMDPATAAP 74


>12_02_1180 + 26727171-26727239,26728782-26729642
          Length = 309

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 280 CSSGCASCRIP--AELKPSTGATNGVNRPPVP 191
           C S  ASC  P  AEL P T A+ G  +P +P
Sbjct: 40  CLSTSASCTNPVSAELPPITMASQGAAKPKLP 71


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 219 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 79
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 RIARREQKLKEHGASSCISGKRGRRC 181
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 216 MESTDPQCHILQHRRPRLPL 157
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,952
Number of Sequences: 37544
Number of extensions: 238225
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)