Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20409
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    45   8e-04
UniRef50_Q7S728 Cluster: Putative uncharacterized protein NCU043...    36   0.64 
UniRef50_UPI0000E815AE Cluster: PREDICTED: similar to glucocorti...    34   2.0  
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   2.0  
UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1; ...    33   2.6  
UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1...    33   4.5  
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12...    32   6.0  
UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole...    32   7.9  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 45.2 bits (102), Expect = 8e-04
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +3

Query: 201 FQLSGNSGRKHSRCCTSIYGNLVAGSIVSQLTAAAMVAPTP 323
           F  +G +    +    + YGN+VAGS++SQLT+AAM+APTP
Sbjct: 34  FGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74



 Score = 34.7 bits (76), Expect = 1.1
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +1

Query: 151 IYGTGGLLTPLVAPVL 198
           IYGTGGLLTP+VAP+L
Sbjct: 17  IYGTGGLLTPIVAPML 32


>UniRef50_Q7S728 Cluster: Putative uncharacterized protein NCU04333.1;
            n=1; Neurospora crassa|Rep: Putative uncharacterized
            protein NCU04333.1 - Neurospora crassa
          Length = 1104

 Score = 35.5 bits (78), Expect = 0.64
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 382  TEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMLPATKFPYMLVQQRL 233
            T   + WS V NG  LA+P G G+  AAA   +      K  Y+L  QR+
Sbjct: 1055 TASGKKWSSVVNGAGLAAPSGSGSLKAAAKQHNDSFKDNKVAYLLFYQRI 1104


>UniRef50_UPI0000E815AE Cluster: PREDICTED: similar to
           glucocorticoid-inducible protein; n=1; Gallus
           gallus|Rep: PREDICTED: similar to
           glucocorticoid-inducible protein - Gallus gallus
          Length = 307

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 185 WLPCSV--SAQRE*RQEAQPLLHKHIRKFSGRQHCVTVDCCCHGSPHAMR*C*TSPVLDI 358
           WL  +V  +A+   R+E  P L++H    +G  +C   D CC G       C T P LD 
Sbjct: 13  WLLAAVGSAARARTRRELSPGLYEHGVFDAGGSYCQRGDVCCRGRDDG---C-TVPYLDT 68

Query: 359 APGSDLFC 382
               DLFC
Sbjct: 69  ICYCDLFC 76


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 87  QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 200
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 394

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 99  EHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIYGNLVA 272
           E    S ++G     C N+  WG  DS  G  ARF + G+   +  R C    G L+A
Sbjct: 323 EPSPHSYVTGVDASECSNLGEWGEDDS-DGGAARF-VVGSKSSQMCRMCRECCGRLIA 378


>UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1;
            n=2; Caenorhabditis|Rep: Laminin related. see also
            lmb-protein 1 - Caenorhabditis elegans
          Length = 1067

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 114  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIYG 260
            +C SG +G RC  C   HWGS   + G+  R   +GN        C +  G
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGNIDMAMEGSCDAATG 1023


>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
           Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
           Bacillus subtilis
          Length = 215

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 66  LRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSIS 185
           L + R   K+KEHG  + +S   G   CN   +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156


>UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF3766,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 328

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 196 AREPLMESTDPQCHILQHRRPRLPLMQLE 110
           A +PL   T+P+  +LQ+RRP+L L  L+
Sbjct: 5   AEQPLSLRTEPKLRVLQYRRPKLELQLLK 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,223,350
Number of Sequences: 1657284
Number of extensions: 8228618
Number of successful extensions: 18631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18626
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)