Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20409
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0231 + 21733151-21734905                                         28   3.5  
11_06_0754 - 26935647-26937780,26940890-26941827                       28   4.6  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.6  
03_05_0431 + 24221881-24224586                                         28   4.6  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   6.1  
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    27   8.1  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   8.1  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   8.1  
01_06_0961 + 33383183-33383446,33383568-33383891,33385972-333861...    27   8.1  

>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 340 CLASPHGVGATMAAAVNCDTMLPATKFP 257
           CL  P GVGA       CD M PAT  P
Sbjct: 47  CLRLPLGVGAGGCRVCACDEMDPATAAP 74


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 225 RKHSRCCTSIYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSLQDRTFSV-LFGIKM 401
           ++H+  C+S+ GN +A S  S  TAA   A +       H  +T  ++R F V   GI +
Sbjct: 157 KRHAMFCSSVGGNGIATSTASSSTAATGDASSSSSTICWH--TTRFRERDFCVPHVGINV 214

Query: 402 HLN 410
            +N
Sbjct: 215 AMN 217


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 184 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 44
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 285 TQCCRPLNFRICL-CSSGCASCRY 217
           ++ C+P N R+CL CS GC    Y
Sbjct: 353 SKTCKPANSRLCLPCSVGCPDDSY 376


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 69  RIARREQKLKEHGASSCISGKRGRRC 146
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = +3

Query: 216 NSGRKHSRCCTSIY--------GNLVAGSIVSQLTAAAMVAPTP 323
           +S RK S CC  +Y        GN+++G+++SQL   +     P
Sbjct: 385 HSERKRSACCKVLYFTVWNIFFGNVLSGTVISQLNVLSSPKDIP 428


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 GSRARFQLSGNSGRKHSRCCTS 251
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 181 MESTDPQCHILQHRRPRLPL 122
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>01_06_0961 +
           33383183-33383446,33383568-33383891,33385972-33386130,
           33386213-33386288,33387324-33387495,33388618-33388699
          Length = 358

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 165 GSVDSISGSRARFQLSGNSGRKHSRCCTSIYGNLVAGSIVSQLTAAAMVAPTP 323
           G+ +  +G+ AR +       ++ RC  S+    +  +    L AAA+V   P
Sbjct: 29  GAAERATGAVARVRALARDSERNRRCFVSVGTGRMLAAAFESLAAAALVCMMP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,300
Number of Sequences: 37544
Number of extensions: 247284
Number of successful extensions: 607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)