Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20409
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   3.6  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   4.7  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   8.3  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   8.3  
SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)                27   8.3  
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              27   8.3  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIY 257
           C  ++H G+++ I   + R Q+ G+  R    C TS++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVF 43


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 156 WHWGSVDSISGSRARFQLSGNSGRKHSR 239
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 196 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 71
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 391 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 296
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


>SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)
          Length = 290

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 99  EHGASSCIS-GKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIYGNLV 269
           EH A  C + G     C    HW  +  +    ++ + +GN+  ++ +   S Y NLV
Sbjct: 139 EHDAQRCPAYGSLCNYCSKPNHWSKICRLKQKYSQIRPTGNANARNQQQHRSQYPNLV 196


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -2

Query: 300 QQSTVTQCCRPLNFRICLCS----SGCA 229
           ++ST+ QC RPL+ + CL S     GCA
Sbjct: 363 RKSTIEQCIRPLSLKPCLGSLFETPGCA 390


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,462
Number of Sequences: 59808
Number of extensions: 278016
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)