Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20409
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    33   0.15 
U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical pr...    28   4.2  
L12018-8|AAA65464.1|  129|Caenorhabditis elegans Fmrf-like pepti...    27   5.5  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   7.3  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   7.3  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 114  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIYG 260
            +C SG +G RC  C   HWGS   + G+  R   +GN        C +  G
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGNIDMAMEGSCDAATG 1023


>U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical
           protein T07E3.2 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 371 DLFCFIWN*NAFKFLINLSMRCKKKKTRKL 460
           DLF  I+N     F + L + CKKKK + L
Sbjct: 4   DLFVIIFNFCIITFSVYLGIGCKKKKNKDL 33


>L12018-8|AAA65464.1|  129|Caenorhabditis elegans Fmrf-like peptide
           protein 23 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 462 SSFRVFFFLHRIDKFIKNLNAF*FQIKQKRSD--PGAMSRTG 343
           +S R+F+ L + D   KN N+  +  +  R+   PGA+ R+G
Sbjct: 4   NSMRLFYILSQRDASSKNFNSSIYSRRSSRNSGCPGALFRSG 45


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +3

Query: 99   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIY 257
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C   Y
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPCLKGY 1248


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +3

Query: 99   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIY 257
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C   Y
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPCLKGY 1248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,373,533
Number of Sequences: 27780
Number of extensions: 199990
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)