Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20409
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07790.1 68418.m00892 expressed protein                             30   0.73 
At4g15840.1 68417.m02409 expressed protein                             28   3.9  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   5.1  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   6.8  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   6.8  
At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 111 SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSIYGNLVAGSIVSQ 290
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+  NL+  + +S 
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISS 469

Query: 291 LTA 299
             A
Sbjct: 470 SVA 472


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 180 ISGSRARFQLSGNSGRKHSRCCTSIYGNLVAGSIVS 287
           +SGS   FQ S NS     R CTS+  +   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVV-DKTEGSVVA 149


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 90  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 188
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 385 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 281
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 184 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 38
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 126

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 400 ILIPNKTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMLPATKF 260
           +++ +  + VRS+ D+     L      G+T+   +  D MLPATKF
Sbjct: 15  VILNDFIKSVRSFLDIRR---LFGSASSGSTIIDKIPMDDMLPATKF 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,808,455
Number of Sequences: 28952
Number of extensions: 187391
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)