Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20407
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.54 
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   6.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   6.7  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   8.8  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 45  LTLIPICGFDAACPFFYLDLSYI-ITAFSLPSHILVKDANSNSHYI 179
           L + P  G D   PF YLD SY+  ++ S  SH+ +   +   +++
Sbjct: 368 LVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNFL 413


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 74  VEPTYWDKGKKKIFFMALVGRG 9
           V+ TYW   +K++FF A+   G
Sbjct: 69  VDGTYWSAEEKELFFQAVARNG 90


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -3

Query: 383 LRVHIVDVMLLHVYRLTNKLQTNNYASILLTRSYLAILPSYSSMQ*EAKSPLYREEFY 210
           + V ++  ++   + LT K+  +    +++   +L +  S  ++Q    S LYRE+F+
Sbjct: 692 VEVDLIKELITSYFNLTRKIIIDQVPKVIM---HLLVNASKDAIQNRLVSKLYREDFF 746


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 80  CSVEPTYWDKGK 45
           C+ +PT+WDKG+
Sbjct: 157 CNKDPTWWDKGE 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,304
Number of Sequences: 5004
Number of extensions: 57562
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)