Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20407
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    29   3.0  
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902...    29   5.3  
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414     28   9.2  

>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 170 TLYSFIYII--IAKKRKTLLGTEDSWPLTAS 256
           TL SFIY+   + K+R  + GT+ SW LTA+
Sbjct: 146 TLGSFIYVPCEVMKQRMQVQGTKKSWALTAT 176


>02_02_0331 +
           9017291-9019084,9019205-9019402,9020014-9020184,
           9020292-9020435,9020552-9020764,9020859-9021929,
           9022365-9022391
          Length = 1205

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 YHTSSLHSVFPHTFSLRTPTPTHIIFIHLYYY 198
           +H+   H+  P  +S R P+P  I   HLYY+
Sbjct: 24  FHSCCNHTYPPGYYSFRLPSPQEIPPPHLYYH 55


>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
          Length = 114

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 703 KIVTDRNITIHIGFHITELRTESNIQNILMIPVNL 599
           K  TD NI IH   H T+  T++ +     IPVN+
Sbjct: 68  KKFTDNNIHIHRAAHRTDNNTDNLLGQQQQIPVNI 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,667
Number of Sequences: 37544
Number of extensions: 296186
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)