Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20407
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    28   5.8  
At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to e...    28   5.8  

>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 325 SLFVSRYTCNNITSTMCTRSKRVCVTTEV*IE*L-FCTLMYSNNNE 459
           +LF   YTC      MCTR  + C+   V I    FC   YS   +
Sbjct: 83  ALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTD 128


>At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 261

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 325 SLFVSRYTCNNITSTMCTRSKRVCVTTEV*IE*L-FCTLMYSNNNE 459
           +LF   YTC      MCTR  + C+   V I    FC   YS   +
Sbjct: 81  ALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTD 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,174
Number of Sequences: 28952
Number of extensions: 266265
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)