Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.37 
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   6.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.1  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 43  LTLIPICGFDAACPFFYLDLSYI-ITAFSLPSHILVKDANSNSHYI 177
           L + P  G D   PF YLD SY+  ++ S  SH+ +   +   +++
Sbjct: 368 LVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNFL 413


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 78  CSVEPTYWDKGK 43
           C+ +PT+WDKG+
Sbjct: 157 CNKDPTWWDKGE 168


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 28  KKYLFLTLIPICGFDAACPFFYLD--LSYIITAFSLPS 135
           + Y+FL L+P+    AAC     D  L+ + T+ SL S
Sbjct: 229 RTYMFLELLPLQSITAACESILKDYLLNLVKTSESLSS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,476
Number of Sequences: 5004
Number of extensions: 44650
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)