Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    29   2.7  
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902...    29   3.6  

>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 168 TLYSFIYII--IAKKRKTLLGTEDSWPLTA 251
           TL SFIY+   + K+R  + GT+ SW LTA
Sbjct: 146 TLGSFIYVPCEVMKQRMQVQGTKKSWALTA 175


>02_02_0331 +
           9017291-9019084,9019205-9019402,9020014-9020184,
           9020292-9020435,9020552-9020764,9020859-9021929,
           9022365-9022391
          Length = 1205

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 101 YHTSSLHSVFPHTFSLRTPTPTHIIFIHLYYY 196
           +H+   H+  P  +S R P+P  I   HLYY+
Sbjct: 24  FHSCCNHTYPPGYYSFRLPSPQEIPPPHLYYH 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,971
Number of Sequences: 37544
Number of extensions: 239789
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)