Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   36   0.032
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)                   29   2.8  
SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)                  28   6.4  
SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)                  28   6.4  

>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 113 SLHSVFPHTFSLRTPTPTHIIFIHLY 190
           SLH+ + HT++  TPTPTH  + H Y
Sbjct: 867 SLHAGYTHTYTPSTPTPTHAEYTHAY 892



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ + HT++  TPTPT   + H Y
Sbjct: 768 LHTQYTHTYTPGTPTPTQREYTHAY 792



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ +   ++  TPTPTH  + H Y
Sbjct: 461 LHAQYTLAYTPSTPTPTHAEYTHAY 485



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ +   ++  TPTPTH  + H Y
Sbjct: 644 LHAQYTLAYTPSTPTPTHAEYTHAY 668



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ + H ++  TPTPTH +   L+
Sbjct: 438 LHTEYIHAYTPSTPTPTHRVHPRLH 462



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ + H ++  TPTPTH +   L+
Sbjct: 621 LHTEYIHAYTPSTPTPTHRVHPRLH 645



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 LHSVFPHTFSLRTPTPTHIIFIHLY 190
           LH+ + H ++  TP+PTH +   L+
Sbjct: 807 LHTEYTHAYTPSTPSPTHRVHTRLH 831


>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 61  CGFDAAC-PFFYLDLSYIITAFSLPSHILVK 150
           C   A C  + Y  L YIITA+ LP+H+L +
Sbjct: 161 CDKPANCLNYDYDKLGYIITAYGLPTHLLTQ 191


>SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
          Length = 623

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 47  PLSQYVGSTLHVLFFI*IYHTSSLHSVFPH 136
           P+S+ +  TL V F +  Y  S L+S+FPH
Sbjct: 175 PISRVLLFTLTVFFSLLFYLFSRLNSIFPH 204


>SB_26014| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
          Length = 578

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 47  PLSQYVGSTLHVLFFI*IYHTSSLHSVFPH 136
           P+S+ +  TL V F +  Y  S L+S+FPH
Sbjct: 232 PISRVLLFTLTVFFSLLFYLFSRLNSIFPH 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,812
Number of Sequences: 59808
Number of extensions: 313559
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)