Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z54237-8|CAE52902.1|  771|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z54235-10|CAE52905.1|  771|Caenorhabditis elegans Hypothetical p...    29   3.2  
AF000196-10|AAC24250.1|  172|Caenorhabditis elegans Hypothetical...    28   4.2  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   4.2  
AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical...    27   7.4  

>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 166 SHYIHSFILLLQKNVKLFSVQRTL 237
           ++YI SFI+L+Q N++  ++Q+ L
Sbjct: 759 NNYISSFIILIQANIRYLNIQKDL 782


>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 82  PFFYLDLSYIITAFSLPSHI 141
           PF Y    YII+AFSLP HI
Sbjct: 9   PFVYSMCFYIISAFSLPIHI 28


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
            T11B7.4d protein.
          Length = 1424

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 107  TSSLHSVFPHTFSLRTPTPT 166
            T SLH V    +SLR PTPT
Sbjct: 1134 TQSLHDVLDEFYSLRKPTPT 1153


>Z54237-8|CAE52902.1|  771|Caenorhabditis elegans Hypothetical
           protein T11B7.4c protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 107 TSSLHSVFPHTFSLRTPTPT 166
           T SLH V    +SLR PTPT
Sbjct: 481 TQSLHDVLDEFYSLRKPTPT 500


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
            protein T11B7.4d protein.
          Length = 1424

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 107  TSSLHSVFPHTFSLRTPTPT 166
            T SLH V    +SLR PTPT
Sbjct: 1134 TQSLHDVLDEFYSLRKPTPT 1153


>Z54235-10|CAE52905.1|  771|Caenorhabditis elegans Hypothetical
           protein T11B7.4c protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 107 TSSLHSVFPHTFSLRTPTPT 166
           T SLH V    +SLR PTPT
Sbjct: 481 TQSLHDVLDEFYSLRKPTPT 500


>AF000196-10|AAC24250.1|  172|Caenorhabditis elegans Hypothetical
           protein B0041.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 67  FDAACPFFYLDLSYIITAFSLPSHILVKDANSNSHYIHSFILLLQKNVKLFSVQRTLGL 243
           F+ AC +F L  + II   SL S  L      NS +I S + + +KN+ +FS    LGL
Sbjct: 109 FEIAC-YFILHWASIIFNQSLSSIKLSYHFGMNS-FIDSLLSIFKKNLNIFSKIGGLGL 165


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 22  RHKKYLFLTLIPICGFDAACPFFYLDLSYIITAFSLPSHILVKDANSNSHYIHSFILLLQ 201
           R   +LF  +I +  F AAC  ++     II    + S++ +   + +  Y +S  +LL 
Sbjct: 123 RRTLFLFFVIIALTSFSAACTQYFFPCCVIIVDIDIMSYMFL---SIDGVYSYSNAILLV 179

Query: 202 KNV 210
            N+
Sbjct: 180 YNI 182


>AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical
           protein Y87G2A.14 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 11  LCLQGIKNIFFLPLSQYVGSTLHVLFFI 94
           L +  +++IF++PLSQ++  T H  F I
Sbjct: 129 LSIGEVESIFWIPLSQFLEDTHHSTFLI 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,380
Number of Sequences: 27780
Number of extensions: 244713
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)