Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   6.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.9  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.9  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 50 RVRKRYFLCLVGRGSC 3
          R+R +Y+ C +  GSC
Sbjct: 40 RLRNQYYDCFIDAGSC 55


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 50 RVRKRYFLCLVGRGSC 3
          R+R +Y+ C +  GSC
Sbjct: 40 RLRNQYYDCFIDAGSC 55


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 170 IIFIHLYYYCKKT*NSSRYRGLL 238
           ++F+ LYYY   T +  + RG++
Sbjct: 13  VLFLALYYYLTSTFDFWKSRGVV 35


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 62  VGSTLHVLFFI*IYHTSSLHSVFPHTFSLRTPTPTHII 175
           +G  + +L F+ +     +  +F  T SLRTP+   +I
Sbjct: 21  LGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVI 58


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 50 RVRKRYFLCLVGRGSC 3
          R+   YF CL+  G C
Sbjct: 42 RLLNNYFKCLMDEGRC 57


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 50 RVRKRYFLCLVGRGSC 3
          R+   YF CL+  G C
Sbjct: 42 RLLNNYFKCLMDEGRC 57


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
          protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 50 RVRKRYFLCLVGRGSC 3
          R+   YF CL+  G C
Sbjct: 42 RLLNNYFKCLMDEGRC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,468
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)