Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20406
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a...    28   4.0  
At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to e...    28   4.0  
At4g16850.1 68417.m02545 expressed protein                             27   9.1  

>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 263

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 323 SLFVSRYTCNNITSTMCTRSKRVCVTTEV*IE*L-FCTLMYSNNNE 457
           +LF   YTC      MCTR  + C+   V I    FC   YS   +
Sbjct: 83  ALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTD 128


>At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 261

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 323 SLFVSRYTCNNITSTMCTRSKRVCVTTEV*IE*L-FCTLMYSNNNE 457
           +LF   YTC      MCTR  + C+   V I    FC   YS   +
Sbjct: 81  ALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTD 126


>At4g16850.1 68417.m02545 expressed protein
          Length = 313

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 49  LIPICGFDAACPFFYLDLSYIITAFSLPSHILVKDANSN 165
           L+PI  F  A P   L LS  +T+F L +H+   +A +N
Sbjct: 31  LLPIFAF-IAIPLAALHLSLTLTSFRLKNHVFRLEALAN 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,175
Number of Sequences: 28952
Number of extensions: 211539
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)