Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20405
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.031
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 75  ESQVPPLHAPXARVTSHQTPEAPLPTHSAPESRAPPHHAP 194
           +SQ P   AP  + + HQ+P+AP        S+ PP   P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 25.0 bits (52), Expect = 0.67
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 299 SRIPPHHLESRIPPVPSPHGPGFNPARLSVSPANQSMQTTKSRSPSAGPRPSTPGS 466
           S IP  +L + +   P P+   F  ++  VSP + S   +  RSP+ G  P + G+
Sbjct: 365 SSIPKLNLSTALMSQPPPN---FGVSQ--VSPVSMSALVSAVRSPAGGQLPPSAGA 415



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 PPHHLESRIPPVPSPHGPGFNPARLSVSPAN 400
           PP+  +   P  P    P  NP+++ +SPA+
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 17/63 (26%), Positives = 20/63 (31%)
 Frame = +3

Query: 24  PAHHAPDSSRVSSHHIPESQVPPLHAPXARVTSHQTPEAPLPTHSAPESRAPPHHAPSIP 203
           P HH         H  P         P  +   H TP A     +A +    PHH P  P
Sbjct: 414 PHHHTMGHGHSHIHATPHHHHSHAATPHHQ---HSTPLAHSSYPAAIQIGHTPHHHPHPP 470

Query: 204 LHP 212
             P
Sbjct: 471 ETP 473


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 320 LESRIPPVPSPHGPGFNPARLSVSPANQSMQTTKSRSPSAGPR 448
           L +R   VP  H PG       ++   ++  T     P+A PR
Sbjct: 702 LMNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPR 744


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 320 NDGVECGNPLRAATRVSSLNAENA 249
           N G+ECG  ++   R   L ++NA
Sbjct: 467 NLGIECGYEIKKLLRYKLLISQNA 490


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 69  IPESQVPPLHAPXARVTSHQTPEAP 143
           +P+  +PP  AP   V  HQ    P
Sbjct: 484 LPQWCLPPREAPLVGVQPHQDSATP 508


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 33   HAPDSSRVSSHHIPESQVPPLHAPXARVT 119
            HAP +    +  +P+ Q  P  +P  R+T
Sbjct: 1267 HAPPAYSCGTVSVPQQQQLPPSSPQPRLT 1295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,352
Number of Sequences: 438
Number of extensions: 4332
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)