Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20400
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.94 
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   1.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.0  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    25   8.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.8  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 497  NFTGITLRNTIEILCWIWKGSRFPPIY 417
            NF     R+ +  LCW  +GS FPP Y
Sbjct: 1746 NFLARIARDFLLELCWNIEGSEFPPPY 1772


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 183 FNNYIMFGRKTTRRHPRFL 239
           F  Y+ F R+  RRHP+FL
Sbjct: 85  FAYYVYFDREEARRHPKFL 103


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 363 DREEKGLLDGKNDIF-----IITVDWGKSGPFPNPTQNFNCVS*GNTSKIEFK 506
           ++EE+ + D +ND+      ++ +   KSG  P+ T  +     G+  K EFK
Sbjct: 425 NQEEEDIQDTENDLLNANYTLLPLTTDKSGTRPSTTLQYELHKIGSNIKAEFK 477


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 177 VDFNNYIMFGRKTTRRHPRFLLKVISI*ILYQCFSK-CTLLKLNLI*HQCTGPF 335
           +DF +YI F  KT   +   L+       +   F +  T+  L  + H CT  F
Sbjct: 60  IDFKSYIEFVLKTNNSYSAILISYYRCIFIISLFHRPLTIHFLTNLTHGCTRSF 113


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 457 CVGFGKGPDFPQSTVMMKISFFPSNKPFSSRSR 359
           C  + +GP F Q+  + K S   S KP    +R
Sbjct: 667 CKDYAEGPKFLQTRYISKQSEIESKKPLPKANR 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,787
Number of Sequences: 5004
Number of extensions: 52192
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)