Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20400
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33372| Best HMM Match : LRV (HMM E-Value=7)                         29   2.2  
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_5220| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_33372| Best HMM Match : LRV (HMM E-Value=7)
          Length = 311

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = -2

Query: 336 RMDPYIGVKLDLVLKGYTC*NTDTKSI---YLLLLVGNAGVDVSFSFQT*YNY*NQLISL 166
           R++P+ G  +   L   T  + D+  I   YLLL+     VDV F +QT Y+        
Sbjct: 181 RVEPFCGATISRQLSYNTWVDGDSTFIVWNYLLLICSKKIVDVQFVWQTTYS-------- 232

Query: 165 *TDTRTRNEVCLTFLKSIPELS 100
              TR R   C+  L  +P+L+
Sbjct: 233 -VATRPRPRGCVCSLCGLPQLN 253


>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 77  ICVVFVYSESSGILFKNVKQTSLRVLVSVYRE 172
           +CVVF+Y  SS +   N+ Q + +VL ++  E
Sbjct: 260 VCVVFIYYLSSNVFSTNLPQKAAQVLQTLLEE 291


>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 43  KCVF*MSDNGK-NMCGFC----IFRKFWNTFQKCQTDFITCSSI 159
           KC   ++ N + N+ GF     +FR FW+ FQ CQ D   C S+
Sbjct: 24  KCGIKVNSNAEFNLQGFTFKSLLFRTFWDCFQACQ-DEPNCLSV 66


>SB_5220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 50  FSECLTTEKICVVFVYSESSGIL 118
           FSE     K+C+++VY++ S IL
Sbjct: 139 FSEAPVNLKLCIIYVYTKKSRIL 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,007
Number of Sequences: 59808
Number of extensions: 342761
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)