Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20400
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77133-5|CAO82039.1| 237|Caenorhabditis elegans Hypothetical pr... 30 1.1
U41105-9|AAL38967.1| 111|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 4.5
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 6.0
>Z77133-5|CAO82039.1| 237|Caenorhabditis elegans Hypothetical
protein K03A11.6 protein.
Length = 237
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 58 MSDNGKNMCGFCIFRKFWNTFQKCQTDFITCSSIGL 165
++++ N+CGFC+ ++ C TD C ++G+
Sbjct: 131 LTEDCPNVCGFCLEGGCFDKAVDCTTDISICMNVGM 166
>U41105-9|AAL38967.1| 111|Caenorhabditis elegans Hypothetical
protein T02G5.14 protein.
Length = 111
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -3
Query: 227 VSTC----RFPSKHNIIIEINSFPYRPILEHVMKSV*HF*KVFQN--FLNIQKPHIFFPL 66
+STC +FP K N+ I++ +F Y ++ K + K+F N F+N +F
Sbjct: 2 ISTCELILKFPMKFNLFIDVFNFEYL-FSDNQRKYILSRLKLFNNCLFINFASFIVFAKF 60
Query: 65 SDIQKTHLL 39
+I ++H L
Sbjct: 61 DNIYRSHQL 69
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Frame = +2
Query: 5 TSLHSSQSVKNLTNVFSECLTTEKICVVFVYSESSGILFKNVKQTSL---------RVLV 157
TS ++QS+ NL NV E T K CV + ++ K T + V+V
Sbjct: 1103 TSFEATQSIANLMNVQMEHPPTSKCCVQLSLTYNNTSTKKLAPATKVDQPLQNIIFNVIV 1162
Query: 158 SVYREMS*FQ*LYYVW--KENDTSTPAFPTKSNKYIDFVS 271
S R F L +++ KEN P+ K+ + D V+
Sbjct: 1163 SQSRTSESFSVLRFIYRIKENFVVVPSANEKNKQMADEVN 1202
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Frame = +2
Query: 5 TSLHSSQSVKNLTNVFSECLTTEKICVVFVYSESSGILFKNVKQTSL---------RVLV 157
TS ++QS+ NL NV E T K CV + ++ K T + V+V
Sbjct: 1097 TSFEATQSIANLMNVQMEHPPTSKCCVQLSLTYNNTSTKKLAPATKVDQPLQNIIFNVIV 1156
Query: 158 SVYREMS*FQ*LYYVW--KENDTSTPAFPTKSNKYIDFVS 271
S R F L +++ KEN P+ K+ + D V+
Sbjct: 1157 SQSRTSESFSVLRFIYRIKENFVVVPSANEKNKQMADEVN 1196
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Frame = +2
Query: 5 TSLHSSQSVKNLTNVFSECLTTEKICVVFVYSESSGILFKNVKQTSL---------RVLV 157
TS ++QS+ NL NV E T K CV + ++ K T + V+V
Sbjct: 1103 TSFEATQSIANLMNVQMEHPPTSKCCVQLSLTYNNTSTKKLAPATKVDQPLQNIIFNVIV 1162
Query: 158 SVYREMS*FQ*LYYVW--KENDTSTPAFPTKSNKYIDFVS 271
S R F L +++ KEN P+ K+ + D V+
Sbjct: 1163 SQSRTSESFSVLRFIYRIKENFVVVPSANEKNKQMADEVN 1202
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Frame = +2
Query: 5 TSLHSSQSVKNLTNVFSECLTTEKICVVFVYSESSGILFKNVKQTSL---------RVLV 157
TS ++QS+ NL NV E T K CV + ++ K T + V+V
Sbjct: 1097 TSFEATQSIANLMNVQMEHPPTSKCCVQLSLTYNNTSTKKLAPATKVDQPLQNIIFNVIV 1156
Query: 158 SVYREMS*FQ*LYYVW--KENDTSTPAFPTKSNKYIDFVS 271
S R F L +++ KEN P+ K+ + D V+
Sbjct: 1157 SQSRTSESFSVLRFIYRIKENFVVVPSANEKNKQMADEVN 1196
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 58 MSDNGKNMCGFCIFRKFWNTFQKCQTDFITCSSIGL 165
++++ N CGFC + C +D C++IG+
Sbjct: 143 LAEDCPNFCGFCDLNGCIDLVTGCDSDVSICNAIGM 178
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
protein F54B3.1b protein.
Length = 3394
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 76 NMCGFCIFRKFWNTFQKCQTDFITCSSIGL 165
++C F F KF TF CQ F+T S++ +
Sbjct: 95 SICLFTPFMKFEETFTLCQGVFVTESNVDM 124
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
protein F54B3.1a protein.
Length = 3396
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 76 NMCGFCIFRKFWNTFQKCQTDFITCSSIGL 165
++C F F KF TF CQ F+T S++ +
Sbjct: 95 SICLFTPFMKFEETFTLCQGVFVTESNVDM 124
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 203 WKENDTSTPAFPTKSNKYIDF 265
WK+ T +P + T SN Y+DF
Sbjct: 242 WKDLVTRSPIYITNSNPYLDF 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,227
Number of Sequences: 27780
Number of extensions: 279529
Number of successful extensions: 609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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