Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20397
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   3.1  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   4.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   5.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   5.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.2  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.2  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.5  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   9.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   9.5  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 462 WTNSQPTCVKWLPEPIDIYNVIAATQLEI*DLSIVTMFNMNVSSDVISVR 313
           ++ SQP  +K    P+DI N+ AA +L+  DL +  +  ++ + D    R
Sbjct: 222 YSASQPPSIKTDASPVDIKNMDAAEKLKKIDLLLEEILQLDSAYDAAERR 271


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 343 HIKHCNYTEISYLKLGGGNY 402
           H+K+CN  +I+ +  GGG Y
Sbjct: 125 HVKNCNKKKITLIATGGGAY 144


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 216 YGKFSNYLLSPLTFLSNVSTYEHTFVVYNNKYMLFF 109
           + K S  ++S L  +++ +T  H F++ +N++ LF+
Sbjct: 293 FSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLFY 328


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 793 SQILKIRKLIYVLFKEFMEASHICYKHFKHIEFFCLS 683
           SQI+KI +L+   F+E      + YK    + FFC S
Sbjct: 246 SQIMKITQLLQQTFQEARNTDPLVYKWV--LNFFCKS 280


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 129 NKYMLFFSSMNFRINYDVIAFELVTVIN 46
           N+Y L+FS +  + +Y+ +  EL  ++N
Sbjct: 381 NQYRLYFSRLQLQADYEFLVNELYRLLN 408


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 165  VSTYEHTFVVYNNKYMLFFSSMNFRINYDVI 73
            ++TY H   V N KY L F+S++  ++ +++
Sbjct: 1212 ITTYTHLSEVENKKYSLRFNSIDEALDVELL 1242


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 207 FSNYLLSPLTFLSNVSTYEHTFVV 136
           F+ ++L+PL+FL  + +  HT V+
Sbjct: 145 FALFVLTPLSFLKRLDSLRHTSVI 168


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 771 N*YTFCLRNLWKHHIYVTNTSNILNSF 691
           N Y     NLW H +Y  ++ ++ NSF
Sbjct: 4   NVYLLTSFNLWSHGVYKISSISLSNSF 30


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 611 YIQLTVSFNSNVLFKDILLINPKIRFYNY 525
           Y  LT  FNS++LF  I  IN   R Y Y
Sbjct: 156 YTNLTPVFNSSILFSSITKINFS-RGYKY 183


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 231 VNKVAYGKFSNYLLSPLTFLSNVSTYEHTFVVYN-NKYMLFFSSMNFRINYDVIAFELVT 55
           V  V +   + Y++S  +  S +  YE      N  K+ L   S   RI Y+V  FEL++
Sbjct: 173 VQGVCWDPLNQYIVSESSDRS-ICLYEIQEEKKNPKKFQLVLKSRICRIEYNVTKFELIS 231

Query: 54  V 52
           V
Sbjct: 232 V 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,906
Number of Sequences: 5004
Number of extensions: 59576
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)