Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20397
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 369  DLISQV--GWRQLRCRCLWAPVTT*HRWAVSS-STHLCNKMKQV 491
            D +SQ   G  +L C CL  PV   +R   +  +TH CNK K++
Sbjct: 1938 DCVSQPVEGIARLGCSCLSFPVARIYRRTPNKYATHTCNKYKRI 1981


>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 787 ILKIRKLIYVLFKEFMEASHICYKHFKHIEFFCLS*D*ANLNCALLYAMRQYENHFGINT 608
           +  ++ +I++L K   E   +C   FK   FF L+ D       + Y+  Q+E    +NT
Sbjct: 459 VASVKSIIHLL-KAIKEKPDVCEPVFKIGNFFELTADEFPDELEISYSHLQFEKDLEVNT 517

Query: 607 Y 605
           Y
Sbjct: 518 Y 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,845,232
Number of Sequences: 59808
Number of extensions: 416757
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)