Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20397
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.6  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 195 LLSPLTFLSNVSTYEHTFVVYNNKYMLFFSSMNFRINYDVIAFELVTV 52
           ++S    LSN   Y + +  YNN Y   +  + +   Y++I  E + V
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQY---YNIINIEQIPV 125


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 70  GNYVIINSKVHGRKE 114
           GNY+I N+ V G+KE
Sbjct: 489 GNYIIKNNSVGGKKE 503


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 183 LTFLSNVSTYEHTFVVYNNKYMLFFSSMNFRINY 82
           ++ LSN   Y + +  YNN Y  +   + + INY
Sbjct: 82  ISSLSNNYNYSN-YNNYNNNYNNYNKKLYYNINY 114


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 210 KFSNYLLSPLTFLSNVSTYEHTFVVYNNKYMLFFSSMNFRINY 82
           K+SNY      + +N + Y +    YNN Y   +  + + INY
Sbjct: 323 KYSNYN----NYNNNYNNYNN----YNNNYNNNYKKLYYNINY 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,964
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)