BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20397 (800 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g00960.1 68417.m00130 protein kinase family protein contains ... 29 4.7 At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 28 6.3 At4g00570.1 68417.m00080 malate oxidoreductase, putative similar... 28 8.3 >At4g00960.1 68417.m00130 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain Length = 372 Score = 28.7 bits (61), Expect = 4.7 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -1 Query: 584 SNVLFKDILLINPKIRFYNYCKLLST*MTSQHLF 483 SNVL D + NPKI + KL +T TSQ +F Sbjct: 178 SNVLLDDAM--NPKIADFGMVKLFNTDQTSQTMF 209 >At1g61840.1 68414.m06978 DC1 domain-containing protein similar to hypothetical protein GI:3184279 from [Arabidopsis thaliana]; contains Pfam profile PF03107: DC1 domain Length = 814 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +1 Query: 322 NDVRTNIHIKHCNYTEISYLKLGGGNYVVDVYG 420 N+ T +HI+ C Y EI YLKL G Y+ D G Sbjct: 740 NECCTTLHIE-CLYGEILYLKL--GKYIFDSGG 769 >At4g00570.1 68417.m00080 malate oxidoreductase, putative similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP:P37225) {Solanum tuberosum} Length = 607 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 135 KLQTCVHKCSRLIEMLMEIVNNLK 206 ++ TCV +C R IE + NN K Sbjct: 71 RVMTCVQQCDRFIESFRSLENNTK 94 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,177,691 Number of Sequences: 28952 Number of extensions: 281657 Number of successful extensions: 560 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 560 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1814318400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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