Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20396
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   3.9  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.1  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   6.8  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.0  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 523 TAIFGLQVNLKYRNFHNRNHSPLNQRSADPTDS 621
           TA+ GL +N  Y    N  HSP    ++ PTDS
Sbjct: 362 TAVNGLPMN-SYTPHSNHLHSPSPNSNSGPTDS 393


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 491 PENMNPLGQSCSKDQPSQQLRKLLHDKG 408
           P N +PL  S +K  PS +L     DKG
Sbjct: 416 PANSSPLAASSTKSLPSSELLDSSSDKG 443


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 439 WDGWSFEQDCPKGFMFSGD 495
           WD W+ +  CP G+  S D
Sbjct: 210 WDAWNIDTWCPLGYGISHD 228


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 494 SPENMNPLGQSCSKDQPSQQLRKL 423
           S EN+  +G S +K Q +++LRKL
Sbjct: 102 SLENLTKMGVSAAKFQTTEELRKL 125


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 259 PAFAIPVSNEIIQKIEYDPLYQQE 330
           P+F IP  ++I+ KI   PLY  +
Sbjct: 578 PSFVIPRLDDILNKIADKPLYSPD 601


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 192 CLSMATSSILSSHLFGPR--IAAAACLCNSCLQRNHSE 299
           CL+    S   SHL  P   +   ACLC S L  N+SE
Sbjct: 617 CLNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSE 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,702
Number of Sequences: 5004
Number of extensions: 49723
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)