Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20396
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    32   0.43 
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926...    29   3.0  
03_05_0871 + 28396964-28399843                                         29   3.0  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    29   4.0  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    28   5.3  
08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047     28   5.3  
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     28   7.0  

>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 182 ADKLPFYGNFLNPFFAFIRTSHSSCCLPLQFLSPTKSFRRLSMTHY 319
           ADK P Y      F   +   H   CL L F S  K+FR    THY
Sbjct: 511 ADKEPLYELLKMKFNLDLSEPHVKGCLELLFSSSYKTFRHRCYTHY 556


>12_01_0933 -
           9263023-9263146,9263224-9263416,9263495-9263634,
           9263760-9263881,9263970-9264039,9264463-9264498,
           9264567-9264692,9265294-9265424,9265549-9265645,
           9265858-9266027,9267817-9267874,9268758-9269074
          Length = 527

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 208 LPQSFLRIYSDLA*QLLPAFAIPVSNEIIQKIEYDPLYQQELI 336
           LP SF ++Y D A +L P F     NE++ ++  D  + QE +
Sbjct: 143 LPMSFSKVYWDQAVELAPLF-----NELVDRVSLDGDFLQETL 180


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 80  SQTDGRQKRLLFYDEDGNLVKTYTNPYLRDLALHADKLPFY 202
           ++++ R+ R  FY E+G+ V      Y R LALH   + F+
Sbjct: 517 ARSEARESRF-FYCENGDAVSRAEGKYYRRLALHTKLIAFH 556


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 553 KYRNFHNRNHSPLNQRSADP 612
           + RN  +RN +PL QRS+DP
Sbjct: 458 RIRNLASRNSTPLEQRSSDP 477


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 491 PENMNPLGQSCSKDQP 444
           P+N+NPLGQ  SK +P
Sbjct: 755 PDNVNPLGQESSKHEP 770


>08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047
          Length = 357

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 449 QPSQQLRKLLHDKGYGTWALFPSQAGL 369
           +  Q+L   + + G+G+W   PS+AGL
Sbjct: 20  EEDQKLLAYIEEHGHGSWRALPSKAGL 46


>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 116 YDEDG-NLVKTYTNPYLRDLALHADKLP--FYGNFLNPFFAF--IRTSHSSCCLPLQFLS 280
           +D+D  N++K   +PY+ D+ L    L   ++G F  P      + T H++CC+ LQ   
Sbjct: 264 HDQDVFNVIKH--DPYVSDIGLKIKFLSTSYFGGFCEPSRDLNKVCTMHANCCIGLQSKV 321

Query: 281 P 283
           P
Sbjct: 322 P 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,734
Number of Sequences: 37544
Number of extensions: 319683
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)