Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20396
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)               30   1.8  
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)             30   1.8  
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                29   4.1  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   4.1  
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)                   29   4.1  
SB_38971| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.1  
SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_12046| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.1  
SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029)                  27   9.4  
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)                   27   9.4  
SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4)                     27   9.4  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 355 PAIVSNPACEGKR-AQVP*PLSCNSFLNCWDGWSFEQDCPKGFMF 486
           P    +P CE K+      P +CN F+ C +G+++++DCP    F
Sbjct: 589 PTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKF 633



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 337 INPKKDPAIVSNPACEGKR-AQVP*PLSCNSFLNCWDGWSFEQDCPKGFMFS-GDGYCDS 510
           + P        +P C GK+  +     +CN F+ C +G+ +  DCP    +    G C+ 
Sbjct: 504 VPPTTKAPFTKSPFCVGKQNGKYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEW 563

Query: 511 LKTL 522
             T+
Sbjct: 564 ADTV 567



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 379 CEGKR-AQVP*PLSCNSFLNCWDGWSFEQDCPKGFMFS 489
           CEG++       ++CN F+ C +  ++  DCP    F+
Sbjct: 731 CEGRKDGDYVDAVNCNGFIKCSNQLTYYFDCPSNLRFN 768


>SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)
          Length = 271

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +2

Query: 14  TKPSTMIKVLSFVLLMIFGGCSSQTDGRQKRLLFYDEDGNLVKTYTNPYLRDLALH 181
           T   T+ ++   +L  IF G  S+ D       F D DG L   Y   YLR  ALH
Sbjct: 49  TSVFTLTRIKDSLLGRIFSGRQSELDKDNSGKYFIDRDGFL---YILDYLRSKALH 101


>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
          Length = 725

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 278 TGIAKAGSSCYARSE*MRRKD*GSCHRKAVCQREEPS 168
           +G   +G  CY   +   + D G CH+ A+C+R  P+
Sbjct: 518 SGYEGSGQQCY-EIDPCAKSDRGGCHKDAICKRTGPN 553


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 PLSCNSFLNCWDGWSFEQDCPKGFMFSG-DGYCDSLKTLTA 528
           P  C+ ++ C +G + E  CP G  ++     CD   TL A
Sbjct: 347 PSKCDMYITCSNGIAHEMPCPAGLNWNDVTKECDGRATLLA 387


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 379  CEGKRAQVP*PLSCNSFLNCWDGWSFEQDC 468
            C  K   +P    C+   +C DGW   QDC
Sbjct: 2294 CGSKNLCIPSSWLCDGSDDCGDGWDERQDC 2323


>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
          Length = 1590

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 424 SFLNCWDGWSFEQDCPKGFMFSGDGYCDSLKTLTAIF 534
           +F+  +  W + +  P+GF+ SGDGY     T+ A F
Sbjct: 725 TFITPFGRWRYTR-APQGFLSSGDGYNRRFDTILAEF 760


>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2436

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 392  GPKSHSLCHAIASLIAGTAGLSSRIALRDSCSLE 493
            GPKSH +    A  +  TA L++RI  + S S++
Sbjct: 1939 GPKSHPIVRYTAEDVPSTAPLNARILNKTSSSID 1972


>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 476 PLGQSCSKDQPSQQLR-KLLHDKGYG 402
           PL  SC+  +PS+ LR +  HD G+G
Sbjct: 208 PLSGSCTSQKPSRTLRDRERHDSGFG 233


>SB_12046| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 392 GPKSHSLCHAIASLIAGTAGLSSRIALRDSCSLE 493
           GPKSH +    A  +  TA L++RI  + S S++
Sbjct: 155 GPKSHPIVRYTAEDVPSTAPLNARILNKTSSSID 188


>SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 424 SFLNCWDGWSFEQDCPKGFMFSGDGYCDSLKTLTAIF 534
           +F+  +  W + +  P+GF+ SGDGY      + A F
Sbjct: 70  TFITLFGRWRYTR-APQGFLSSGDGYNRRFDAILAEF 105


>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
          Length = 584

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 268 QRQAAAAMRGPNKCEERIEEVAIERQFVSVKSQV 167
           +RQ+      PN  EER++ ++  R   +V+ QV
Sbjct: 356 ERQSPMGSENPNDSEERVDPMSCYRMMSTVRDQV 389


>SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 119 DEDGNLVKTYTNPYLRDLALHADKLPFYGNFLNPFFAFIRTS 244
           D  GNL++ +T P   D  +H +      NFLNPF+  IR S
Sbjct: 254 DNSGNLMRVFT-PKCDDGDMHEE------NFLNPFYFKIRFS 288


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 86  TDGRQKRLLFYDEDGNLVKTYTNPYLRDLALHADKLPF 199
           TDG   R+  +D +GN +K + N    D+AL   KL +
Sbjct: 825 TDGNNHRVQVFDSNGNNIKNFGN----DVALENAKLKY 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,462,973
Number of Sequences: 59808
Number of extensions: 362926
Number of successful extensions: 4378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4378
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)