Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20396
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 31 0.89
U40061-7|AAA81153.1| 357|Caenorhabditis elegans Unidentified vi... 30 1.6
U64609-5|AAB04602.2| 331|Caenorhabditis elegans Serpentine rece... 29 2.1
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 2.7
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 2.7
AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical ... 28 4.8
AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical ... 28 4.8
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 27 8.3
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 27 8.3
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 27 8.3
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 424 SFLNCWDGWSFEQDCPKGFMFS-GDGYCD 507
SF C DG +F DCP +F+ G CD
Sbjct: 449 SFFTCHDGRAFANDCPGDLVFNKATGTCD 477
>U40061-7|AAA81153.1| 357|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 7 protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 280 RQELQRQAAAAMRGPNKCEERIEEVAIERQF 188
R++ R+A + + P C++ IEE+ +E+QF
Sbjct: 257 REDEARKAMSYYQSPADCKQSIEEILLEKQF 287
>U64609-5|AAB04602.2| 331|Caenorhabditis elegans Serpentine
receptor, class m protein1 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 191 LPFYGNFLNPFFAFIRTSHSSCCLPLQF 274
+PFY +FL P F I TSH S LP F
Sbjct: 263 IPFYVSFLMPLFR-IETSHLSVYLPYLF 289
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 373 PACEGKRAQV-P*PLSCNSFLNCWDGWSFEQDCPKGFMFS 489
P CEGK + P + +FL C G + DCP +F+
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFN 284
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 373 PACEGKRAQV-P*PLSCNSFLNCWDGWSFEQDCPKGFMFS 489
P CEGK + P + +FL C G + DCP +F+
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFN 284
>AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical
protein F56C11.6b protein.
Length = 431
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 280 SNEIIQKIEYDPLYQQELIINPKK 351
S +++Q I+ PLY+ E+ INPK+
Sbjct: 150 SEDLLQFIDQQPLYKIEMGINPKR 173
>AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical
protein F56C11.6a protein.
Length = 548
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 280 SNEIIQKIEYDPLYQQELIINPKK 351
S +++Q I+ PLY+ E+ INPK+
Sbjct: 267 SEDLLQFIDQQPLYKIEMGINPKR 290
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 229 IYSDLA*QLLPAFAIPVSNEIIQKIEYDPLYQQE 330
+YSD Q LP + P++ ++ I DPL QE
Sbjct: 969 LYSDQLRQFLPLYGRPIAAIDLKPIGVDPLEHQE 1002
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 229 IYSDLA*QLLPAFAIPVSNEIIQKIEYDPLYQQE 330
+YSD Q LP + P++ ++ I DPL QE
Sbjct: 1028 LYSDQLRQFLPLYGRPIAAIDLKPIGVDPLEHQE 1061
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 229 IYSDLA*QLLPAFAIPVSNEIIQKIEYDPLYQQE 330
+YSD Q LP + P++ ++ I DPL QE
Sbjct: 1012 LYSDQLRQFLPLYGRPIAAIDLKPIGVDPLEHQE 1045
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,512
Number of Sequences: 27780
Number of extensions: 280436
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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