Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20396
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28670.1 68416.m03578 expressed protein                             29   2.5  
At1g70370.1 68414.m08095 BURP domain-containing protein / polyga...    29   2.5  
At3g58760.1 68416.m06549 ankyrin protein kinase, putative simila...    29   3.3  
At4g05100.1 68417.m00758 myb family transcription factor (MYB74)...    28   4.4  

>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 104 RLLFYDEDGNLVKTYTNPYLRDLALHADKL 193
           RL  Y E G+  +T+T+   ++LA+HA +L
Sbjct: 203 RLPIYGEGGSSAQTFTDTIRKELAIHAKEL 232


>At1g70370.1 68414.m08095 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 626

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 YDEDGNLVKTYTNPYLRDLALHADKLPFYGNFLN 217
           Y +DGN+V      Y R+ A H DK   YG   N
Sbjct: 142 YSKDGNVVTDSFRRYSRNAAGHDDKFTVYGENSN 175


>At3g58760.1 68416.m06549 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 471

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 208 LPQSFLRIYSDLA*QLLPAFAIPVSNEIIQKIEYDPLYQQELIINPKKDP 357
           LP+  LR Y D    L+PA A+  + EI + + Y   ++ E II+   +P
Sbjct: 241 LPKGDLRQYLDRKGPLMPAHAVKFALEIARGMNYLHEHKPEAIIHCDLEP 290


>At4g05100.1 68417.m00758 myb family transcription factor (MYB74)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to   cDNA putative transcription
           factor (MYB74) mRNA, partial cds GI:3941505
          Length = 324

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 497 PSPENMNPLGQSCSKDQPSQQLRKLLHDKGYGTWALFPSQAGL 369
           P  E  N L +     +  Q+L   ++  GYG W   P  AGL
Sbjct: 5   PCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,791
Number of Sequences: 28952
Number of extensions: 262203
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)