Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20393
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)         59   2e-09
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.8  

>SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)
          Length = 242

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 42/79 (53%)
 Frame = +2

Query: 242 RVERFLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 421
           ++   +V+Y    +LQ  G I +++  +HF  Q DY  F+P IG KL G+VNK    H+ 
Sbjct: 62  KLRAVIVAYDKVTLLQRRGNIIDESPFLHFDAQVDYITFKPEIGNKLIGVVNKFGYDHIG 121

Query: 422 VLVHRVFNVVIPQPTEEPG 478
            LVH  FN  I +     G
Sbjct: 122 CLVHGCFNASIAKSRTSNG 140


>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 323

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 373 TYVWLKYEVIRLNLEMYIRIIIAYSANILKYTR 275
           TYV    EVI  N  MYI   +A + ++L+Y R
Sbjct: 110 TYVTTLLEVIETNTRMYIITDLAENGDLLEYIR 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,934
Number of Sequences: 59808
Number of extensions: 295529
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)