Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20393
         (583 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1185|AAF52451.1|  253|Drosophila melanogaster CG13773-P...    51   1e-06
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   4.6  

>AE014134-1185|AAF52451.1|  253|Drosophila melanogaster CG13773-PA
           protein.
          Length = 253

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 41/70 (58%)
 Frame = +2

Query: 245 VERFLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 424
           ++  ++  KN  +L     +R D+  +H  + AD+++F+P  GA L+G+V      H+S 
Sbjct: 66  LDGIVLGIKNIKVLGQTAGLRADDPTMHLVINADFYVFRPKAGAILSGVVRHISRHHVSA 125

Query: 425 LVHRVFNVVI 454
           +++RVFN  I
Sbjct: 126 VIYRVFNTSI 135



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 63  IMSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLL-DYKVGKFD 239
           I+ K IKF ++EL+  A+   SC+       +LA+ P+ + N K ++  LL   KVG +D
Sbjct: 4   ILQKYIKFSVKELENYASSPESCVRCITTDMHLAMGPYGMANFKHALHELLIRTKVGFYD 63

Query: 240 KELNG 254
             L+G
Sbjct: 64  SGLDG 68


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 266   YKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVL 427
             Y+NPC    V   R + A    Q   +Y+   PY G +   ++N  CS+HL+ L
Sbjct: 17964 YQNPCGSNAVCRERGEAASC--QCLPEYY-GNPYEGCRPECVLNSDCSSHLACL 18014


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,709,277
Number of Sequences: 53049
Number of extensions: 417278
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)